Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01356 ATGACGCAAGCATCAGAAGACCCAAAATCTGAAAATTTTTCAGATTTTGTTGCTGAGCAAGTTATTGATAATGATCAAGAAAAAGGTGATATTGGGATGGTCAAAGGTTCACACTGCAATACGATGACACAAGCATCAGAAGACCCAAAATCTGAGAACTTTTCAGATTTTGTTGCTGATCAAGTTATTGATAATGATCAAGAAAAACATAATGAAAATGATGGAGCAAGGGGAAAAGATTCCAACTTTGACACGAGAAAACAAGCATCAGAAGATCCAAAATCTGAAACGACTTCAAATTTTGATGCTGATCAAGTTATTGAAACCAATCAAGATACTGATAAGGAAGGTGATGGACTGAAGGAAAAGGTTTCCAACTTCGACATGATAGCACAAGCATTAAAAGATCCAAAATTAAGAAAGCCCTCAGATTTCGATGCTGATCAAGTTATTGATACTCTTCGAGATACAGATAAGGAGAATGATGCAGAGAAGGGAAAAAGCTACGATGTCAAGACGTTACATGTACAGGACGATCCAAAATCAGAAAATAATTCAGATCTTAAGTCTATTCATCATGAATTGCCTGAAACCAAGGCAGAATCATTGGGGGGATCAAGTGATGATGGATCCGTACAAGAAAGCAAGTATTGTTCCGGCTCTAGTTTGGAACATACTGAGGAGAATGGTCACGTCATGTTCACAGAAAAATTAACTGACGTGGACTGTTTCGGCGCAGAGGCAGAGACAGATATGGAGAAGAAAAAATGTGATATAATAGAGCCAAGGGCATGCCATGAATATACAATGCCAGCAGCCAAAATTGTCGATACTAAAGATGAAGAAATTGCGATAGATTTGATCGGTCATAATACTTCATGTTCACAACCAGAAGAGAGTATGGTGATAGAATTACCGAAGTCATGCATGCAAGTTCCTGAGTTTGAAAACAGATGCACGGTTTTGAAAGAAAACCCCCAATTAAGAGAAGAACAGGGAACTGAAACAATCGTTCAAGACAATCCTCCAACTCAATCTAAGATTTCAAATGAGGTCCAAGAGGAATTTAACACGATTAGGTCGCACTCCGAGGAAAATGCAGCTTCTGAATCTGTTGTCAGAAACCAGAACGAGACTCCTGGAGAAGATTGCGAGGATTCAGATGGAGAATATCTGGAAATTTCTGAACAAGTTATGGAAGTTTTAAATTCATCTATTGGAGATTGCAAGCAGAAGAATGGGGGGATGGGAGAGACAACGGAAATTTCAACAAACATTGGACATGAAGGGGAAAGACGAGAACCAAAGGAAAACTTATTTGAACCTCTTTTAGGGCTTCAACCTCAAAGCCATCAAAAGGAAGCTTCGATCACATTTCAAACTGGAGAAAGTACAGATGAATCAATCTCAACACTGAGGCAAATAACCGAAAAAGCAACTGAAAAATCCAAGAAAAACTCCTCAGACTCTCCACATTATATACAAACAGCTTCAGCAACATTCACGGAAACTAAACCATCGACAAATCCGATCGACGAACAGAATGTAACAACACTTCCCCTCTCAACATTCACAGAGGAAAATCAAGAATCTCCAGGAAGAACAAGCAACGAATCAAATTCCGACAATTCAGTCGGTCATATCGAAATGCGTAAATCGCCTAGCTTCAATATAGATATCCAAAGCGAAGGAAAGACAGTAGAAACAGAGAAAATTCCATTGTTATACCAGATCAAGACAATCGAAGACTTACAAAATCTGCAGGAGATTAGCTTCCCAAATCCAACGGAGAAGCGAGTTGTAAAGTTAGGAAGAAGCGAATCAGAGAAATCGAGACCTTCATTCCCAGGGTTCGCAAAAGAAAAAGAAAAATCGGAGATGGAATCCACCGCAATCAATCAACATAAATTAGGCGCCACTAAAAACGCAGTGAAAGACTTACCACCACCATCGCCGATTCGGAAAGGGAAGCGCAGAAGCAAATCCCTAATCTTCGGAACCTGCATCTGCTGTGCTACTGCAATCAATTGA 2031 39.59 MTQASEDPKSENFSDFVAEQVIDNDQEKGDIGMVKGSHCNTMTQASEDPKSENFSDFVADQVIDNDQEKHNENDGARGKDSNFDTRKQASEDPKSETTSNFDADQVIETNQDTDKEGDGLKEKVSNFDMIAQALKDPKLRKPSDFDADQVIDTLRDTDKENDAEKGKSYDVKTLHVQDDPKSENNSDLKSIHHELPETKAESLGGSSDDGSVQESKYCSGSSLEHTEENGHVMFTEKLTDVDCFGAEAETDMEKKKCDIIEPRACHEYTMPAAKIVDTKDEEIAIDLIGHNTSCSQPEESMVIELPKSCMQVPEFENRCTVLKENPQLREEQGTETIVQDNPPTQSKISNEVQEEFNTIRSHSEENAASESVVRNQNETPGEDCEDSDGEYLEISEQVMEVLNSSIGDCKQKNGGMGETTEISTNIGHEGERREPKENLFEPLLGLQPQSHQKEASITFQTGESTDESISTLRQITEKATEKSKKNSSDSPHYIQTASATFTETKPSTNPIDEQNVTTLPLSTFTEENQESPGRTSNESNSDNSVGHIEMRKSPSFNIDIQSEGKTVETEKIPLLYQIKTIEDLQNLQEISFPNPTEKRVVKLGRSESEKSRPSFPGFAKEKEKSEMESTAINQHKLGATKNAVKDLPPPSPIRKGKRRSKSLIFGTCICCATAIN 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8885696 8887726 - CmaCh06G013560.1 Cma06g01356 296910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01356 676 MobiDBLite consensus disorder prediction 37 51 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 358 387 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 1 124 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 151 199 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 446 492 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 358 378 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 408 434 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 602 658 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 408 424 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 62 93 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 108 123 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 151 217 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 524 553 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 602 630 - -
Cma06g01356 676 MobiDBLite consensus disorder prediction 449 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01356 - - - cmax:111474732 1355.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01356 Cma-Chr6:8885696 Cma06g01360 Cma-Chr6:8893110 9.05E-08 proximal
Cma14g01759 Cma-Chr14:12818115 Cma06g01356 Cma-Chr6:8885696 3.12E-40 transposed
Cma14g01758 Cma-Chr14:12817461 Cma06g01356 Cma-Chr6:8885696 2.03E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g578 . . . . . . . . . . Cma06g01356 . Car06g01177 . Sed02g1355 . . Bhi01g00747 Tan10g0777 Cmetu06g1274 . Hepe05g1595 . Lcy11g1592 . . . . . . . . . . . Lsi05g01648 . . Cme06g00565 . . . . . . . . . Cmo06g01371 . . . . . . . . . . . . . . . . . . . . . . Csa03g01281 Chy06g00533 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008657 0 1 0 0 0 1 2 1 1 1 1 1 4 1 1 3 1 0 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01356 Cma_Chr06 FPKM 2.998709 3.140327 0.471798 0.601676 0.044666 0.037124 0.100976 2.080735 1.583092 1.805376
Cma06g01356 Cma_Chr00 FPKM 3.069394 3.388555 0.517983 0.543107 0.070769 0.070749 0.07625 1.753654 1.410881 1.500632