Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01363 ATGACAGAGAGCTCGGAGCAGCAACTTGTAATCAAACCCCACTTTCAGAACTCTGTTCAAAAAGCTCAAAAACCAATCCAAAATGGTAAAGGCCAGCCGAATCTCGAACACCAAAACACCAAAAACAGAGCCCGAAGAAGAAGCAGAGGCGGTCGGAAATCCGATCAGGGAGAAGTCGTTATGATGCCAAATTCTCGGCCCTGCACGGTGGCACGTAAACCTAACGCACCGGAGATTACCGCCGGAGCTTTAGTGGCGAGTACTAATCCAAATCCAAATGGTGCAAGCAATTCAAGCAAGTCTGTGAGTTTTGCCCCACGACCTGGATTTGGGCAAGTTGGGACAAAGTGTATGGTAAAAGCAAACCATTTCTTTGCAGAGTTACCCGACAAAGATTTGAATCAATATGATGTTACAATCACTCCAGAAGTGGCCTCAAGAACTGTGAACAGAGGCATTATGGCTGAATTGAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTATGGAGAGAGTTTAACATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGATTATAAAGTGGTCATTAAGTTTGTTGCAAGGGCAAATTTGCAGTATTTGGGTCAGTTTCTTGCCGGCAAGCGTGCCAATGCACCACAAGAAGCCATTCAAATACTGGACATTGTCTTGAGAGAGCTATCATCCAAAAGGTACTGTCCTATAGGGAGATCCTTCTTTTCTCCTGATATCAGGTCACCTCAACGGCTCGGTGATGGCCTAGAATCATGGCGCGGTTTTTACCAGAGTATAAGGCCTACTCAAATGGGACTGTCTCTGAACATTGATATGGCTTCAGCTGCGTTCATCGAGCCTCTCCCTATCCTCGAGTTTGTTGCTCAGCTTCTCGGGAAAGATGTTTTGTCACGGCCACTGTCTGATTCCGATCGCGTAAAGATCAAAAAGGCTCTTAGAGGGGTGAAAGTCGACGTAACGCACCGGGGTAATCCTACAAGAGAACTAGTGTTTCCTGTTGACGACAACTCGACCATGAAGTCGGTTGTCGAGTACTTCCAGGAGATGTATGGCTTCACCATCCAACATGCTCATCTGCCTTGCCTCCAAGTAGGAAATCAGAAGAAGGCCAATTATTTACCAATGGAGGCCTGCAAAATTGTTGGGGGACAAAGGTATACAAAGAGATTGAATGAGAAACAAATAACTGCACTTCTGAAAGTCACATGTCAAAGACCAAGGGATCGAGAAAACGACATTCTAAAGACTGTTCAACATAATGCCTATAACAACGATCCTTATGCAAAGGAGTTTGGGATAAATGAGTTTGGGATAAATGTTAGTGAAAAGATGACTTCTGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATACCATGATACTGGAAAAGAGAAGGATTGCTTGCCTCAAGTGGGTCAATGGAATATGATGAATAAGAAAATGATTAATGGAATGACGGTTAGTCGGTGGGCATGTATCAACTTCTCTAGGAGCGTGCAGGAGAGCGTTGCTCGTGGATTTTGTTCTGAACTTGCTCAAATGTGTCAAGTTTCTGGAATGGAATTCAATACAGAACCAGTTATTCCAATATACAATGCTAGGCCAGAACAAGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACTAAAGGAAAAGAGTTAGAGCTATTATTAGCCATCTTACCCGACAGTAACGGATCGCTTTACGGTGATCTTAAGCGAATCTGTGAGACGGATCTTGGTTTAATATCACAATGCTGTCTTACAAAACATGTGTTCAAGATTAGTAAGCAATATCTTGCTAATGTTTCACTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATCAGCTGCAGGATACCGCTCGTAAGCGACATACCGACTATAATATTTGGNGCAGACGTGACTCATCCAGAGAACGGCGAAGATTCAAGCCCTTCGATAGCTGCTGTTGTAGCATCTCAGGATTGGCCTGAAGTGACAAAGTATGCTGGACTAGTATGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTATAAAACTTGGCAGGATCCTGTCCGTGGCACCGTCAGCGGGGGCATGATCAGGGATCTTCTGGTTTCGTTTAGGAAAGCAACAGGGCAGAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTTAGTGAAGGACAATTCTATCAAGTATTGCTTTACGAGTTAGATGCAATCAGGAAGGCATGTGCTTCTTTAGAACTGAATTACCAGCCACCCGTGACGTTCATCATCGTACAAAAACGACATCACACCCAACTAGACAGAAGTAGCACAGACAGGAGTGGAAACATTTTACCTGGCACCGTAGTCGACTCCAAAATATGCCACCCGACAGAATTTGATTTCTATCTTTGTAGCCATGCTGGAATTCAGGGGACAAGCCGGCCAGCCCATTACCATTCCTTAACCAATAATCTTTGCTACACGTATGCAAGGTGTACGCGTTCGGTTTCTGTCGTCCCTCCAGCATACTATGCACATTTAGCAGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAAGAGAATGGCACGAGTGGTCGTTCTGCTAAGAGTGCGACCGGGGTTCGCCCCTTGCCAGCTCTAAAGGAAAATGTGAAGAGAAAATCGGAACCACCAAGGAAAGGGGAGGCTCGTAGTCGGAGCGATGACGGGAAAGGTTCGGCTTCCTCTGCATTAGTTCCCTTGTAA 2826 44.8 MTESSEQQLVIKPHFQNSVQKAQKPIQNGKGQPNLEHQNTKNRARRRSRGGRKSDQGEVVMMPNSRPCTVARKPNAPEITAGALVASTNPNPNGASNSSKSVSFAPRPGFGQVGTKCMVKANHFFAELPDKDLNQYDVTITPEVASRTVNRGIMAELRLPAYDGRKSLYTAGELPFVWREFNIKLVDEEDGVSGPKRERDYKVVIKFVARANLQYLGQFLAGKRANAPQEAIQILDIVLRELSSKRYCPIGRSFFSPDIRSPQRLGDGLESWRGFYQSIRPTQMGLSLNIDMASAAFIEPLPILEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVDVTHRGNPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILKTVQHNAYNNDPYAKEFGINEFGINVSEKMTSVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNTEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDSNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLELNYQPPVTFIIVQKRHHTQLDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGTSGRSAKSATGVRPLPALKENVKRKSEPPRKGEARSRSDDGKGSASSALVPL 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8906984 8916501 + CmaCh06G013630.1 Cma06g01363 296917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01363 941 SMART DUF1785_2 248 300 IPR014811 -
Cma06g01363 941 Gene3D - 471 644 - -
Cma06g01363 941 SUPERFAMILY Ribonuclease H-like 569 882 IPR012337 -
Cma06g01363 941 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 42 912 - -
Cma06g01363 941 MobiDBLite consensus disorder prediction 1 38 - -
Cma06g01363 941 SUPERFAMILY PAZ domain 295 443 IPR036085 GO:0005515
Cma06g01363 941 MobiDBLite consensus disorder prediction 1 60 - -
Cma06g01363 941 SMART PAZ_2_a_3 305 424 IPR003100 GO:0005515
Cma06g01363 941 MobiDBLite consensus disorder prediction 886 941 - -
Cma06g01363 941 Pfam Piwi domain 582 881 IPR003165 GO:0003676
Cma06g01363 941 Gene3D - 650 915 IPR036397 GO:0003676
Cma06g01363 941 PANTHER PROTEIN ARGONAUTE 10 42 912 - -
Cma06g01363 941 Pfam Argonaute linker 1 domain 249 298 IPR014811 -
Cma06g01363 941 SMART Piwi_a_2 581 882 IPR003165 GO:0003676
Cma06g01363 941 Pfam Argonaute linker 2 domain 428 479 IPR032472 -
Cma06g01363 941 Gene3D paz domain 294 406 - -
Cma06g01363 941 Pfam PAZ domain 339 418 IPR003100 GO:0005515
Cma06g01363 941 MobiDBLite consensus disorder prediction 907 929 - -
Cma06g01363 941 Pfam N-terminal domain of argonaute 116 239 IPR032474 -
Cma06g01363 941 Pfam Mid domain of argonaute 490 567 IPR032473 -
Cma06g01363 941 CDD Piwi_ago-like 453 881 IPR045246 -
Cma06g01363 941 ProSiteProfiles Piwi domain profile. 581 882 IPR003165 GO:0003676
Cma06g01363 941 CDD PAZ_argonaute_like 300 401 - -
Cma06g01363 941 ProSiteProfiles PAZ domain profile. 301 402 IPR003100 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01363 Cma14g01755 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01363 Cma-Chr6:8906984 Cma13g01111 Cma-Chr13:8310637 0 dispersed
Cma14g01755 Cma-Chr14:12799089 Cma06g01363 Cma-Chr6:8906984 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01363 K11593 - csv:101221352 1667.51