Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01365 ATGCAGCTTCTTAACTCCGAAGAAACGGTCGCCGACTCGTCGGAAAGCGGCCTTGGGGAGGAAAGAAATTTGAAATCTTCTAACTTGGTTTCGTTTGAGGGTGATAGTGGAAACGAAACCGATGATTCGGTTATTGATGTATCGGGGAAAAACTTGGATTCTCACTTCTTGGAGGGTTCCCACAGCTCAGTGAAGGGTCTGTACATATTTCGGAATGCGTTCAATTTGATTCCGAAATCAGTTGGCAACTTTAGAGAATTGAGAATGCTGAAGTTCTTCGGGAACGAGATTAATTTGTTTCCGCCGGAGTTGAAGAACTTTTCGGGGTTAGAATGCTTGCAGGTGAAGTTATCATCACCGGGTTTTGGTGGTTTATCATTACACGAACTGAAGGATCTGAAGGAGCTCGAACTATCGAAGATTCCTCCTAAACCTTCGTCGTTTCCAATTCTTAGTGAGATCGCTGGCCTTAAGTGCTTGACTAAGCTCACTGTTTGTCACTTTTCTATTAGATTCCTTCCTCCTGAAATTGGCTGCCTGGATAGTTTGGAGTATCTAGATCTCTCATTTAATAAGATGAAGAGCCTTCCAGCAGAAATAGGCTATTTGAATGCTTTGATATCCTTGAGAGTTGCCAATAACAAGTTGGTGGAACTACCTCCAGCTTTGTCCTCCCTGCAAAAGTTGGAGAATTTGGATCTCTCAAGTAATAGGTTAACGTCATTGGGATCTCTTGAACTTGTATCTATGCATAGCCTTAAGAACTTAAATTTACAGTACAATAAGTTTCTAAGAAGGTGTCAGATACCCTCCTGGATATGCTGCAACTTTGAAGGAAATTGTGGAGACAAAATAGCTGATGAAGAATGTATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCACCATTCCAGACAATAGTGATAATTTTCCACATAAAGGTATTCGTAATCTCTCATCAAACCTATTAATGGGATCTTCAACAAACAGTAGATCATTTGCATCTCGAAAATCAGGTAAGCGATGGCGGAGACGACATTATTTACAGCAAAAAGCTCGCCAGGAGCGTTTGAATAATAGCAGGAAGTGGAAAGGAGTAGATCATCATACTGAAGTGAAGATCCATGAAAATCATGAACTTGGGAGGCTTGATACTGCTCCTACTTCTGAAACTACAGTTGAAGATTCATCAGTTATTGAGGAGTTATATGATAGTAAAGAGACCAGTCATGGAAAAGATGAAGGGGAAGATCTTATCAAGAACCATGAGAAGGACAATTTTGATGTCAAAAAGGAACTACCTGTGGAGGAGTCCTCAGGTATCTGTATTGGTGCTGCAGGAAAAATGACAAGGGACGACAATGAATGTCGTGAGCCCAGTGAGACTTTGCCGCTACCAGGAAATGAAGCACATGACCTAGAAGGGTCATCATCCCAAATATCAAAGGATAATGCTAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGGCAGCTGAAGATAGCTCAAGTTTATCTTGCAAGTACAATAATATATCATTTTGCAGCGTTGAAGATTATGTTCCGGATGGATTTTATGATGCAGGGCGTGATCGTCCCTTTATGTCATTAAGGAATTATGAGCAAAATTTTCATCTTGATTCTCGTGAAGTCATTCTTGTCAACAGGGAACATGATGAATTATTAGACTCTACAGTGATATCTGCGAAGTCATTGGTACTTCGTCTAAAGCAGATTAACCGAACCCAAGAAAGACATCAAGTTCTTGATGACATGCATATCATACAAGTACTTGCTCTATTTGTGTCTGATCATTTTGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAAAGCTGTTTCTGGTTCCAAGTATCAGAAGCCTTTTGTCTGCACCTGCTCAACTGGAGATCGGAATAATCTTACTGCGTCCACTAAATTAACAGTGGATAATTATGAGGATATTCTTTTTACTGATATCTGTGAGAAATCTCTTCGTGCTATTAAAGCTAGTCGAAATTCCGTCATAGTTCCCCTTGGAGCTCTGAAATTTGGTGTGTGCAGGCATAGAGCGCTTCTTCTTAAGTATTTGTGTGACCGAATGGAGCCTCCAGTACCTTGTGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAATGTGATCTTAGTGAAAAGAGGCAATGCTTTGGTTCGAATGGTTGTTGATGCATGTCGACCAAATGATATACGAGAAGAAGCAGATCCTGAGTATTTTTGCAGGTATATTCCTCTCAGTCGTGCAGAACTTCCTATTTCTTTCGGAATGTCATCCAGTCCAGGGTTTTCCTTCCCGTCTCTGTCCAACTGTGATGAGATTGAGAAGGCACCTTCTAGTTCTGTGATAAAGTGCAAACTTGGGTCAGTTGAGGCCGCTGCAAAGTTACGGATGCTTGAAGTTTGTGAATCTTCATTTGATGAGATAAGGAACTTTGAATACAGTTGCTTAGGTGAAGTTAGAATACTGGGTGCTTTGAAACACTCCTGCATAGTACAGATGTATGGGCATCAGATATCTTCCGAATGGATTCCTTCTGAGGACGGAAAACTGAAGCGCCGGTTACTTAGATCTGCAATTTTTTTAGAGCACGTTAAAGGGGGATCTTTAAAGAGCTACTTGGACAAGTTGTACCAAGCTGGGAAAAAGCACATTCCAATGGATCTGGCATTGCATGTAGCTCGAGATGTTGCAAGTGCTTTGGTAGAGCTGCATTCGAAACACATCATTCATCGTGACATCAAAAGTGAAAATGTTTTGATAGATTTTGATGAAAATTCTGATGGAGTTCCCATGGTTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTCCTTGCACACTTGTTGCATTGCCCATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGATGGATGGCTCCAGAAGTTCTACGAGCAATGCATACACCAAATGTTTATGGACTGGAAGTGGATATTTGGTCATTTGGATGTCTGTTATTTGAACTGTTGACTTTTCAAATTCCGTACTTGGGGCTGACAGAGTTGCAGATTTTCGATCAACTTCAGATGGGCAAACGACCAGAATTGATAGGAGAGCTTGAGGAGGAGGCACTGGGGTTGATAAAGGAAAGCTCAATGTCTCAATCTGTTCAAGAATCAGATGGTTCAGAGAAAGACCAAGAAACCAAAACATTCTTGATCGACTTGTTTTGCAAGTGTACTCAAAAAAATCCGAACGACCGACCAACAGCGGAAGAACTACACAAAATTCTGCTTGAGCACACAGCCAAAGTGTAG 3369 41.2 MQLLNSEETVADSSESGLGEERNLKSSNLVSFEGDSGNETDDSVIDVSGKNLDSHFLEGSHSSVKGLYIFRNAFNLIPKSVGNFRELRMLKFFGNEINLFPPELKNFSGLECLQVKLSSPGFGGLSLHELKDLKELELSKIPPKPSSFPILSEIAGLKCLTKLTVCHFSIRFLPPEIGCLDSLEYLDLSFNKMKSLPAEIGYLNALISLRVANNKLVELPPALSSLQKLENLDLSSNRLTSLGSLELVSMHSLKNLNLQYNKFLRRCQIPSWICCNFEGNCGDKIADEECISSTVEMDVYEATIPDNSDNFPHKGIRNLSSNLLMGSSTNSRSFASRKSGKRWRRRHYLQQKARQERLNNSRKWKGVDHHTEVKIHENHELGRLDTAPTSETTVEDSSVIEELYDSKETSHGKDEGEDLIKNHEKDNFDVKKELPVEESSGICIGAAGKMTRDDNECREPSETLPLPGNEAHDLEGSSSQISKDNAKLKRYSERELDNPKPCKSRKAAEDSSSLSCKYNNISFCSVEDYVPDGFYDAGRDRPFMSLRNYEQNFHLDSREVILVNREHDELLDSTVISAKSLVLRLKQINRTQERHQVLDDMHIIQVLALFVSDHFGGSDRSAMVEKTRKAVSGSKYQKPFVCTCSTGDRNNLTASTKLTVDNYEDILFTDICEKSLRAIKASRNSVIVPLGALKFGVCRHRALLLKYLCDRMEPPVPCELVRGYLDFLPHAWNVILVKRGNALVRMVVDACRPNDIREEADPEYFCRYIPLSRAELPISFGMSSSPGFSFPSLSNCDEIEKAPSSSVIKCKLGSVEAAAKLRMLEVCESSFDEIRNFEYSCLGEVRILGALKHSCIVQMYGHQISSEWIPSEDGKLKRRLLRSAIFLEHVKGGSLKSYLDKLYQAGKKHIPMDLALHVARDVASALVELHSKHIIHRDIKSENVLIDFDENSDGVPMVKLCDFDRAVPLRSSLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRAMHTPNVYGLEVDIWSFGCLLFELLTFQIPYLGLTELQIFDQLQMGKRPELIGELEEEALGLIKESSMSQSVQESDGSEKDQETKTFLIDLFCKCTQKNPNDRPTAEELHKILLEHTAKV 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8921012 8929041 - CmaCh06G013650.1 Cma06g01365 296919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01365 1122 MobiDBLite consensus disorder prediction 1 37 - -
Cma06g01365 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Cma06g01365 1122 SUPERFAMILY RNI-like 61 268 - -
Cma06g01365 1122 ProSiteProfiles Leucine-rich repeat profile. 182 203 IPR001611 GO:0005515
Cma06g01365 1122 ProSiteProfiles Protein kinase domain profile. 793 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01365 1122 Pfam Protein kinase domain 838 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01365 1122 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 65 1119 - -
Cma06g01365 1122 SMART serkin_6 793 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01365 1122 MobiDBLite consensus disorder prediction 20 37 - -
Cma06g01365 1122 PANTHER BNAC08G43810D PROTEIN 65 1119 - -
Cma06g01365 1122 SUPERFAMILY Protein kinase-like (PK-like) 789 1115 IPR011009 -
Cma06g01365 1122 SMART LRR_typ_2 226 249 IPR003591 -
Cma06g01365 1122 SMART LRR_typ_2 180 201 IPR003591 -
Cma06g01365 1122 SMART LRR_typ_2 203 225 IPR003591 -
Cma06g01365 1122 SMART LRR_bac_2 226 245 - -
Cma06g01365 1122 SMART LRR_bac_2 180 199 - -
Cma06g01365 1122 SMART LRR_bac_2 203 222 - -
Cma06g01365 1122 Pfam Ethylene-responsive protein kinase Le-CTR1 672 749 - -
Cma06g01365 1122 MobiDBLite consensus disorder prediction 486 507 - -
Cma06g01365 1122 Gene3D Transferase(Phosphotransferase) domain 1 791 1121 - -
Cma06g01365 1122 PRINTS Leucine-rich repeat signature 183 196 - -
Cma06g01365 1122 PRINTS Leucine-rich repeat signature 226 239 - -
Cma06g01365 1122 MobiDBLite consensus disorder prediction 451 509 - -
Cma06g01365 1122 Gene3D Ribonuclease Inhibitor 16 284 IPR032675 -
Cma06g01365 1122 ProSiteProfiles Leucine-rich repeat profile. 228 249 IPR001611 GO:0005515
Cma06g01365 1122 Pfam Leucine rich repeat 206 263 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01365 - - - csv:101218031 1896.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01365 Cma14g01752 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01365 Cma-Chr6:8921012 Cma01g01992 Cma-Chr1:12796667 2.59E-22 dispersed
Cma14g01753 Cma-Chr14:12788596 Cma06g01365 Cma-Chr6:8921012 2.18E-08 transposed
Cma14g01752 Cma-Chr14:12787180 Cma06g01365 Cma-Chr6:8921012 1.40E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68660 PF00069 Pkinase 4.00E-38 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01365 Cma_Chr06 FPKM 7.197237 8.389419 9.085362 10.330004 12.726178 10.568333 14.334233 8.455805 7.233357 7.83946