Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01366 ATGATGCTCGCAACGCTCAAAGCGGAAGAACAGAGCCAGCAACTTCAGATCGTAGAGCGCGAAGATATTGAGGATGAAGACGACTTGTTCGAAGCGATCGACAAACTGACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGACGCAGGGATATACACTTGCAATGGTTTGATGATGCACACGAAGAAGCACTTGACAGGGATAAAAGGTTTATCCGAAGCGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCTAGTGAATTTTGGTTATATCACTGGAAGCGACGTTCTGCTCAGGCTTCCCACCAACATGCGGGGAGGGAATGGAAAGGTTGCATACATCGACACTGAGGGCACTTTCCGACCTGATCGAATTGTGCCTATAGCTGAAAGATTTGGCATGGACCCGGGAGCTGTGCTAGATAATATCATATATGCTCGTGCCTACACCTACGAACATCAGCATAACCTCTTGCTCGGCCTTGCGGCAAAAATGTCCGAAGAACCGTTTAAACTTCTGATTGTTGACTCTATCATTGCACTTTTTCGAGTGGATTTCACTGGAAGAGGAGAACTTGCAGAGCGCCAGCAAAAACTGGCGCAGATGCTGTCCCGATTAACTAAAATTGCAGAAGAGTATAATGTAGCAGTTTACATGACCAACCAAGACCCAGGTGGAGGAGTGTTCGTATCAGACCCCAAAAAACCAGCAGGAGGCCACGTTCTTGCCCATGCTGCCACGGTAAGACTGATGTTCAGGAAAGGCAAAGGAGAACAACGCATCTGTAAGGTGTTCGATGCTCCTAATCTGCCAGAGTCTGAAGCTATATCCTTAACTCACATCACGTCACACTTCATCACCTTCATTTATCATTTTCTGGTTGATAAAGCAGAAGAGAAAAGGCTACACCTTTCACACAATTTTTCCTTGACAGAACCACGTTTTTCAGATAACACCAGGGGGCATTGCAGATGCAAAGGATTGACGCCTCATGTGGTGCTGGAAAATCAAAGGAAACACAGTATGTAA 1041 46.01 MMLATLKAEEQSQQLQIVEREDIEDEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVNFGYITGSDVLLRLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQHNLLLGLAAKMSEEPFKLLIVDSIIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEYNVAVYMTNQDPGGGVFVSDPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPESEAISLTHITSHFITFIYHFLVDKAEEKRLHLSHNFSLTEPRFSDNTRGHCRCKGLTPHVVLENQRKHSM 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8930347 8933997 + CmaCh06G013660.1 Cma06g01366 296920

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01366 346 Coils Coil 1 21 - -
Cma06g01366 346 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 16 103 - -
Cma06g01366 346 Gene3D - 99 301 IPR027417 -
Cma06g01366 346 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 103 282 - -
Cma06g01366 346 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 16 103 - -
Cma06g01366 346 Pfam Rad51 100 280 IPR013632 -
Cma06g01366 346 CDD Rad51_DMC1_radA 100 279 IPR033925 GO:0003677
Cma06g01366 346 SUPERFAMILY Rad51 N-terminal domain-like 25 92 IPR010995 GO:0000166
Cma06g01366 346 ProSiteProfiles RecA family profile 1. 91 227 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cma06g01366 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 279 IPR027417 -
Cma06g01366 346 Gene3D - 10 93 - -
Cma06g01366 346 PANTHER MEIOTIC RECOMBINATION PROTEIN DMC1-LIKE PROTEIN 103 282 - -
Cma06g01366 346 ProSiteProfiles RecA family profile 2. 230 279 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01366 K10872 DMC1; meiotic recombination protein DMC1 - csv:101221817 511.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01366 Cma14g01751 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01366 Cma-Chr6:8930347 Cma12g00880 Cma-Chr12:6653106 3.03E-07 dispersed
Cma10g00797 Cma-Chr10:3665267 Cma06g01366 Cma-Chr6:8930347 5.34E-74 transposed
Cma14g01751 Cma-Chr14:12783535 Cma06g01366 Cma-Chr6:8930347 2.42E-11 transposed
Cma14g01750 Cma-Chr14:12781884 Cma06g01366 Cma-Chr6:8930347 3.69E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01366 Cma_Chr06 FPKM 0.397486 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0