Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01371 ATGGCTGTTCCCGACAAGGAAAGTAATCCCGGTCACCGGTCGCCCGTCGCCGGGTTGGTTTGGATTGATATCTTAATTCATGATCCGAGAGAGGAAGTGATTCAGGCATGGTATATGGATGATAGTAATGAAGACCAGAGGCTTCCTCATCACCTTGATCCGAAGCAATATTTGTCCCTCCAACAACTTGATGAACTTGGAGTTCTGAGCTGGAGACTGGATGCAGACAAATATGAAACAGATGAGGAATTGAAGAAGATACGTCGTGATCGTAATTACTCCTACATGGACTTTTGCGAGGTCTGTCCAGAAAAGCTTCCTAATTATGAAGAGAAGATTAAGAACTTTTACGAGGAACATTTGCACACCGATGAGGAGATCCGTTACTGTGTGGCAGGGAGTGGTTATTTTGATGTTAGGGATCTGAATGACAAATGGATTCGTATTTGGGTAAAGAAGGGAGCAATGATTGTCTTACCTGCTGGAATTTATCATCGCTTCACTCTGGATTCTGACAACTACATCAAGGCTATGCGACTCTTTGTTGGTGATCCTGTCTGGACTCCTCACAACCGTCCCAACGATCATCTTCCCGCGAGGAAGGAGTATCTAAAAATTTTTGTGGAGAAAGAAGGTGGTAACCAAACCATTAACGCTGCAGCTTGA 666 44.29 MAVPDKESNPGHRSPVAGLVWIDILIHDPREEVIQAWYMDDSNEDQRLPHHLDPKQYLSLQQLDELGVLSWRLDADKYETDEELKKIRRDRNYSYMDFCEVCPEKLPNYEEKIKNFYEEHLHTDEEIRYCVAGSGYFDVRDLNDKWIRIWVKKGAMIVLPAGIYHRFTLDSDNYIKAMRLFVGDPVWTPHNRPNDHLPARKEYLKIFVEKEGGNQTINAAA 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8954752 8958236 - CmaCh06G013710.1 Cma06g01371 296925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01371 221 Pfam ARD/ARD' family 35 189 IPR004313 GO:0010309
Cma06g01371 221 PANTHER 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 1 25 219 - -
Cma06g01371 221 SUPERFAMILY RmlC-like cupins 35 207 IPR011051 -
Cma06g01371 221 CDD cupin_ARD 60 189 IPR004313 GO:0010309
Cma06g01371 221 Gene3D Jelly Rolls 23 209 IPR014710 -
Cma06g01371 221 PANTHER ACIREDUCTONE DIOXYGENASE 25 219 IPR004313 GO:0010309
Cma06g01371 221 Hamap 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [ADI1]. 34 197 IPR027496 GO:0016491|GO:0019509
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01371 K08967 mtnD, mtnZ, ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [EC:1.13.11.53 1.13.11.54] - csv:101222292 387.882
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01371 Cma17g00207 CCT
Cma06g01371 Cma14g01745 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01745 Cma-Chr14:12761925 Cma06g01371 Cma-Chr6:8954752 1.04E-134 wgd
Cma17g00207 Cma-Chr17:1073070 Cma06g01371 Cma-Chr6:8954752 2.02E-88 wgd
Cma06g01371 Cma-Chr6:8954752 Cma08g01124 Cma-Chr8:6953686 4.75E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g556 . . . . . . Bma04g00762 . . Cmo17g00199 Cma06g01371 Cma14g01745 . Car14g01573 . Cpe08g00283 Cpe03g01463 . . . . . . . Cla06g00613 Cam06g0651 Cec06g0654 Cco06g0657 Clacu06g0638 Cmu06g0632 Cre06g1399 . . Cone7ag0278 Cone4ag0270 Lsi05g01636 . . . . . Bda11g00597 . . Bpe13g00587 . . Sed09g0733 Cmo06g01384 Cmo14g01782 . Cma17g00207 . Car17g00182 Cpe12g00175 . Bhi12g02240 Tan06g2482 Cmetu05g0857 . . . Lcy13g0312 . . . . . . . . . Chy06g00546 Cme05g00490
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002489 2 2 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01371 Cma_Chr06 FPKM 290.4617 304.156494 775.762512 794.22998 97.165665 89.568565 100.795464 6496.877441 7134.886719 7548.385742