Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01377 ATGGGTAACGCAGATTTTGAGTGCCCTCACCGAGTCGCCATTCCACCAACCAAGCCATTCTTGGAGTCCTTAAGCTCCAACCTCAAAGAAACCTTCTTCCCCGATGACCCTTTCAAACAGTTCAAAAACCAGACTTTAGGACCCCAAATTCTCCTCTGGCTAAAGTACTTCATCCCCATATTCGAATGGGCTCCTCATTACACCCTCGACTTCTTCAAATCCGACCTCGTGTCCGGTGTCACCATAGCCAGTTTAGCCGTCCCTCAGGGCATCAGCTACGCCAGCTTGGCTAGCATCCCTCCTATCATCGGACTCTATTCGAGCTTTATTCCTCCGTTGATATATGCCATGCTTGGTAGCTCGAAAGACGTGGCAGTCGGGACGGTAGCGGTGGCATCGTTGCTCATGGCTGCCATAATGGGGAAGGAAGTCAGCCCCGTCGAACATCCGAAACAATACCTTCAGTTGGTTTTCACTGCCACGTTCTTCGCCGGTGTTTTCCAAGCTTCTCTCGGTTTTCTCAGGCTGGGGCTTATTGTTGACTTTTTGTCGCATGCAACAATAGTGGGGTTCATGGGTGGTGCGGCAACCGTGGTTTGTCTTCAGCAGCTAAAAGGAATATTAGGATTGGTTCATTTCACGCACGAGACCGATATTGTATCCGTTATAACCTCTGTTTCCTCTCAAGTTCATCAGAGCAAGAAGAAACCGATCTTCTTTTGGATAAATGCATTGGCGCCTTTGACGTCGGTCATCTTGGGAAGCCTTCTCGTCTACTTCACCCACGCTGAAAAGCATGGAGTTCAAGTGATTGGGCATTTGAAGAAAGGGTTGAATCCACTATCTGCGACTGATTTAGCATTTGGATCTCCTCATCTCTTAATTGCCATCAAAACAGGGATCATCGTCGGAATCATTGGCCTTGGCATTTGGATCTCCTCATCTCTTAATTGCCATCAAAACAGGGATCATCGTCGGAATCATTGGCCTTGCTTTGGGAGAAGTTTTGCTGCATTTAAGAATTATCACACTGATGGCAACAAGGAGATGATAGCATTTGGGATAATGAACATTGTTGGTTCCTGCACTTCTTGCTACCTGACTTCCGGGCCATTTTCAAGGAGTGCTGTGAACTTCAATGCAGGATGTAAAACTGCAGTCTCCAATATTGTCATGGCAATCGCTGTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACGCCCCTGGTGGTGCTCGCTTGCTGTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACGCCCCTGGTGAAGTCATCCACCTTTGGAAACTTGACAAATTCGACTTTGTCGTCTGCCTCGGTGCATACATCGGTGTCGTCTTTGGCAGTGTTGAAATGGGCTTGATCATTGCGGTTGCACTTTCTGTGTTGAGGGTGCTTCTCATGATCGCAAGGCCAAGAACTTTAGTATTAGGTAACATTCCCAACTCCACAATTTACAGAAGCATTGATCAATACCCAACAGCTGAGCATGTGCCTGGAATTCTCATCCTTCAATTGGAAGCACCAATCTATTTTGCTAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACTGACGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTGGACCTTTCCGGCGTGAGTAGCATTGATTCAAGTGGGATCAGCATGCTTAAAGAGATTAAGAAGAGTATTGAAAGAAAGGGGTTCAAACTTGTTCTTGCAAATCCGAAAAGTGAGGTGATAAAAAAGCTAAACAAGTCGAACTTTATCGAGGCGATCGGGCACGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACGGCCTGCAACTTCGTACTCCAAACATGGAAGCCAAGTCCTGTTGCTGCTGCTGAATTAGATTCAGCTGTGAACAATGTGTAG 1956 45.96 MGNADFECPHRVAIPPTKPFLESLSSNLKETFFPDDPFKQFKNQTLGPQILLWLKYFIPIFEWAPHYTLDFFKSDLVSGVTIASLAVPQGISYASLASIPPIIGLYSSFIPPLIYAMLGSSKDVAVGTVAVASLLMAAIMGKEVSPVEHPKQYLQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGILGLVHFTHETDIVSVITSVSSQVHQSKKKPIFFWINALAPLTSVILGSLLVYFTHAEKHGVQVIGHLKKGLNPLSATDLAFGSPHLLIAIKTGIIVGIIGLGIWISSSLNCHQNRDHRRNHWPCFGRSFAAFKNYHTDGNKEMIAFGIMNIVGSCTSCYLTSGPFSRSAVNFNAGCKTAVSNIVMAIAVMITLLFLTPFFHYTPLVVLACCDDHSVVFDAIFSLHAPGEVIHLWKLDKFDFVVCLGAYIGVVFGSVEMGLIIAVALSVLRVLLMIARPRTLVLGNIPNSTIYRSIDQYPTAEHVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKSSGETSLQYIILDLSGVSSIDSSGISMLKEIKKSIERKGFKLVLANPKSEVIKKLNKSNFIEAIGHEWIYLTVGEAVTACNFVLQTWKPSPVAAAELDSAVNNV 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8979400 8983463 + CmaCh06G013770.1 Cma06g01377 296931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01377 651 PANTHER SULFATE TRANSPORTER 4 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma06g01377 651 ProSiteProfiles STAS domain profile. 504 627 IPR002645 -
Cma06g01377 651 Pfam Sulfate permease family 72 233 IPR011547 GO:0016021
Cma06g01377 651 Pfam Sulfate permease family 235 452 IPR011547 GO:0016021
Cma06g01377 651 CDD STAS_SulP_like_sulfate_transporter 505 620 - -
Cma06g01377 651 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271|GO:0008272
Cma06g01377 651 PANTHER BNAA04G05880D PROTEIN 4 646 IPR030311 GO:0008272|GO:0009507|GO:0015116
Cma06g01377 651 Gene3D STAS domain 484 629 IPR036513 -
Cma06g01377 651 SUPERFAMILY SpoIIaa-like 506 627 IPR036513 -
Cma06g01377 651 Pfam STAS domain 505 623 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01377 Cma-Chr6:8979400 Cma08g00684 Cma-Chr8:4212615 0 dispersed
Cma14g01741 Cma-Chr14:12745410 Cma06g01377 Cma-Chr6:8979400 0 wgd
Cma17g01201 Cma-Chr17:8290197 Cma06g01377 Cma-Chr6:8979400 0 wgd
Cma06g01377 Cma-Chr6:8979400 Cma08g00327 Cma-Chr8:1868717 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01377 K17471 - csv:101203205 985.326