Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01378 ATGAAAACCTCAAACTCCCTCCTCCTCCTCCTCTCTATTCTCATCCTCCTCCCCCTCCCCGAACCTTCTTTTCAAGCATCTCCACTGCCATCTCCGTCGCCATCGCCGCCATCCCCATTTCTCCCCAACCAGAGACTCCTCAAGGCCTACACAGCTCTCCAAGCTTGGAAACACGCCATCACCGACGACCCGACCAACTTCACTGCCGACTGGTACGGCTCCAACGTCTGCAACTACTCCGGCGTCTTCTGTGCCCCTGCTCCCGACGACCCCGACATCCTCACAGTTGCCGGGGTTGACCTAAACCACGTCAACATCTCGGGAACCCTGCCCGACGATCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAATTCCAATCTCTTCTGCGGCACCGTCCCCAACTCCTTCCGTTTCCTCACTCTCCTCTTTGAGCTCGATCTCAGCAACAATGACTTCTCCGGCGAGTTCCCCTCTGTAATTCTCTCTCTCCCTTCCCTCAAATTCCTCGACATTCGATTCAACAAATTCCACGGCGATCTCCCTTCTTCCCTGTTTGAAAAGAAACTCGATGCTCTGTTCATCAATAACAACGATTTCAATTTCTCCCTCCCGGAAAACATCGGCAATTCCCCTGTTTCTGTGCTGGTTTTTGCTAATAACAACATTAATGGCTGCCTCCCCTCGAGTTTGTCAAATATGAACAATACACTCGAAGAAATTATAATCACAAATAGTGGGTTGATTGGGTGTTTGCCGCCGGAAATTGGGTCGCTGAGCAATCTCACCGTTTTCGATGTCAGTGACAACAATCTCGTTGGACCTTTGCCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATATCGCACATAACCAATTATCCGGCGAGATACCGGCGAGTGTCTGCTTGTTGCCGACATTGCAGAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGTCGATGTGCCTGAAGCTTCAGGCGAGTGATGACCGAAAAAATTGTTTGCCGGAAAGACCATTACAACGTTCGCCGGAGGAATGTAAAGCTTTGTACTCTTACCCTGTTGATTGCGGCGTCTTTGGCTGCACTCGACGGCTGCCACCTCCACCGCCGCCGCCGCTTTAA 1143 51.36 MKTSNSLLLLLSILILLPLPEPSFQASPLPSPSPSPPSPFLPNQRLLKAYTALQAWKHAITDDPTNFTADWYGSNVCNYSGVFCAPAPDDPDILTVAGVDLNHVNISGTLPDDLGLLTDLALFHINSNLFCGTVPNSFRFLTLLFELDLSNNDFSGEFPSVILSLPSLKFLDIRFNKFHGDLPSSLFEKKLDALFINNNDFNFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLEEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNIAHNQLSGEIPASVCLLPTLQNFTYSYNFFCSEPSMCLKLQASDDRKNCLPERPLQRSPEECKALYSYPVDCGVFGCTRRLPPPPPPPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8987856 8988998 + CmaCh06G013780.1 Cma06g01378 296932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01378 380 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 32 377 - -
Cma06g01378 380 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 377 - -
Cma06g01378 380 Pfam Leucine rich repeat N-terminal domain 51 84 IPR013210 -
Cma06g01378 380 Gene3D Ribonuclease Inhibitor 211 334 IPR032675 -
Cma06g01378 380 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Cma06g01378 380 Gene3D Ribonuclease Inhibitor 48 210 IPR032675 -
Cma06g01378 380 SUPERFAMILY L domain-like 49 330 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01378 Cma14g01740 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01377 Cma-Chr5:10340590 Cma06g01378 Cma-Chr6:8987856 5.12E-95 dispersed
Cma06g01378 Cma-Chr6:8987856 Cma09g00199 Cma-Chr9:826607 5.37E-111 dispersed
Cma14g01740 Cma-Chr14:12740774 Cma06g01378 Cma-Chr6:8987856 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01378 - - cmos:111457817 623.239