Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01378 ATGAAAACCTCAAACTCCCTCCTCCTCCTCCTCTCTATTCTCATCCTCCTCCCCCTCCCCGAACCTTCTTTTCAAGCATCTCCACTGCCATCTCCGTCGCCATCGCCGCCATCCCCATTTCTCCCCAACCAGAGACTCCTCAAGGCCTACACAGCTCTCCAAGCTTGGAAACACGCCATCACCGACGACCCGACCAACTTCACTGCCGACTGGTACGGCTCCAACGTCTGCAACTACTCCGGCGTCTTCTGTGCCCCTGCTCCCGACGACCCCGACATCCTCACAGTTGCCGGGGTTGACCTAAACCACGTCAACATCTCGGGAACCCTGCCCGACGATCTCGGCCTCCTGACCGACCTTGCCCTGTTCCACATCAATTCCAATCTCTTCTGCGGCACCGTCCCCAACTCCTTCCGTTTCCTCACTCTCCTCTTTGAGCTCGATCTCAGCAACAATGACTTCTCCGGCGAGTTCCCCTCTGTAATTCTCTCTCTCCCTTCCCTCAAATTCCTCGACATTCGATTCAACAAATTCCACGGCGATCTCCCTTCTTCCCTGTTTGAAAAGAAACTCGATGCTCTGTTCATCAATAACAACGATTTCAATTTCTCCCTCCCGGAAAACATCGGCAATTCCCCTGTTTCTGTGCTGGTTTTTGCTAATAACAACATTAATGGCTGCCTCCCCTCGAGTTTGTCAAATATGAACAATACACTCGAAGAAATTATAATCACAAATAGTGGGTTGATTGGGTGTTTGCCGCCGGAAATTGGGTCGCTGAGCAATCTCACCGTTTTCGATGTCAGTGACAACAATCTCGTTGGACCTTTGCCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATATCGCACATAACCAATTATCCGGCGAGATACCGGCGAGTGTCTGCTTGTTGCCGACATTGCAGAACTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGTCGATGTGCCTGAAGCTTCAGGCGAGTGATGACCGAAAAAATTGTTTGCCGGAAAGACCATTACAACGTTCGCCGGAGGAATGTAAAGCTTTGTACTCTTACCCTGTTGATTGCGGCGTCTTTGGCTGCACTCGACGGCTGCCACCTCCACCGCCGCCGCCGCTTTAA 1143 51.36 MKTSNSLLLLLSILILLPLPEPSFQASPLPSPSPSPPSPFLPNQRLLKAYTALQAWKHAITDDPTNFTADWYGSNVCNYSGVFCAPAPDDPDILTVAGVDLNHVNISGTLPDDLGLLTDLALFHINSNLFCGTVPNSFRFLTLLFELDLSNNDFSGEFPSVILSLPSLKFLDIRFNKFHGDLPSSLFEKKLDALFINNNDFNFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLEEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNIAHNQLSGEIPASVCLLPTLQNFTYSYNFFCSEPSMCLKLQASDDRKNCLPERPLQRSPEECKALYSYPVDCGVFGCTRRLPPPPPPPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8987856 8988998 + CmaCh06G013780.1 Cma06g01378 296932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01378 380 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 32 377 - -
Cma06g01378 380 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 377 - -
Cma06g01378 380 Pfam Leucine rich repeat N-terminal domain 51 84 IPR013210 -
Cma06g01378 380 Gene3D Ribonuclease Inhibitor 211 334 IPR032675 -
Cma06g01378 380 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Cma06g01378 380 Gene3D Ribonuclease Inhibitor 48 210 IPR032675 -
Cma06g01378 380 SUPERFAMILY L domain-like 49 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01378 - - - cmos:111457817 623.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01378 Cma14g01740 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01377 Cma-Chr5:10340590 Cma06g01378 Cma-Chr6:8987856 5.12E-95 dispersed
Cma06g01378 Cma-Chr6:8987856 Cma09g00199 Cma-Chr9:826607 5.37E-111 dispersed
Cma14g01740 Cma-Chr14:12740774 Cma06g01378 Cma-Chr6:8987856 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g543 . . . . . . . . . . Cma06g01378 Cma14g01740 Car06g01193 Car14g01568 Sed02g1338 Cpe08g00278 Cpe03g01458 Bhi01g00768 Tan10g0798 Cmetu11g1491 . . . Lcy11g1575 . . . . . . . . . . Cone4ag0264 Lsi05g01631 . . Cme06g00581 . . Bda11g00593 . . . . . . Cmo06g01390 Cmo14g01778 . . . . . . . . . . . . . Cla05g00515 Cam05g0566 Cec05g0578 Cco05g0576 Clacu05g0563 Cmu05g0534 Cre05g0603 . Csa03g01297 Chy06g00552 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma09g00199 . 38 391 Leucine-rich Repeat extension Gene Families AT1G62440 59.3 1.8e-51 201.8
Cma14g01740 CST 43 370 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 9.8e-50 196.1
Cma01g01874 . 61 399 Leucine-rich Repeat extension Gene Families AT1G62440 54.9 7.0e-48 189.9
Cma05g01334 CCT 174 343 Leucine-rich Repeat extension Gene Families AT1G62440 71.8 6.1e-44 176.8
Cma08g00898 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 58.0 3.1e-43 174.5
Cma08g00896 . 35 259 Leucine-rich Repeat extension Gene Families AT1G62440 56.6 5.8e-42 170.2
Cma17g00446 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.6 3.0e-38 157.9
Cma05g01334 CCT 117 520 Leucine-rich Repeat extension Gene Families AT4G13340 72.6 3.2e-66 250.8
Cma14g01740 CST 43 368 Leucine-rich Repeat extension Gene Families AT4G13340 70.6 1.7e-54 211.8
Cma09g00199 . 16 261 Leucine-rich Repeat extension Gene Families AT4G13340 65.0 1.1e-53 209.1
Cma08g00898 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.4 3.6e-49 194.1
Cma08g00896 . 21 259 Leucine-rich Repeat extension Gene Families AT4G13340 61.5 5.2e-48 190.3
Cma01g01874 . 17 221 Leucine-rich Repeat extension Gene Families AT4G13340 62.0 1.3e-43 175.6
Cma17g00446 . 30 225 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 4.9e-38 157.1
Cma06g01378 CST 37 370 Leucine-rich Repeat extension Gene Families AT4G13340 62.4 4.1e-37 154.1
Cma05g01334 CCT 149 520 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 7.0e-70 262.3
Cma09g00199 . 16 399 Leucine-rich Repeat extension Gene Families AT3G24480 62.2 2.3e-57 220.7
Cma14g01740 CST 43 368 Leucine-rich Repeat extension Gene Families AT3G24480 67.3 2.4e-54 210.7
Cma08g00898 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 58.6 9.5e-51 198.7
Cma08g00896 . 21 259 Leucine-rich Repeat extension Gene Families AT3G24480 59.0 8.0e-50 195.7
Cma01g01874 . 25 221 Leucine-rich Repeat extension Gene Families AT3G24480 66.2 1.7e-47 188.0
Cma17g00446 . 30 405 Leucine-rich Repeat extension Gene Families AT3G24480 58.9 1.5e-43 174.9
Cma06g01378 CST 37 370 Leucine-rich Repeat extension Gene Families AT3G24480 59.1 1.0e-36 152.1
Cma14g01740 CST 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 69.9 7.9e-71 265.4
Cma06g01378 CST 39 369 Leucine-rich Repeat extension Gene Families AT3G22800 64.5 3.2e-48 190.3
Cma09g00199 . 62 391 Leucine-rich Repeat extension Gene Families AT3G22800 61.9 1.3e-44 178.3
Cma11g01919 . 29 361 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 2.8e-44 177.2
Cma08g00898 . 62 261 Leucine-rich Repeat extension Gene Families AT3G22800 68.3 2.2e-36 151.0
Cma05g01334 CCT 160 510 Leucine-rich Repeat extension Gene Families AT5G25550 63.1 2.5e-39 160.6
Cma01g01874 . 61 401 Leucine-rich Repeat extension Gene Families AT5G25550 53.3 1.2e-38 158.3
Cma06g01378 CST 37 369 Leucine-rich Repeat extension Gene Families AT5G25550 66.4 3.6e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01378 Cma_Chr06 FPKM 1.03937 2.215241 9.546314 10.443304 0.475399 0.196796 0.138479 0.0 0.052946 0.055782