Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01386 ATGGCGACGTTGTTGCATTCGGAATCTCGGCGCTTGTATTCTTGGTGGTGGGATAGCCATATCAGCCCCAAAAACTCAAAATGGCTACAGGAGAATCTTACAGATATGGATGCCAAAGTAAAAGCAATGATCAAACTCATTGAAGAAGATGCAGACTCCTTTGCAAGAAGAGCAGAAATGTACTACAAGAAACGTCCGGAGCTAATGAAATTAGTCGAGGAATTTTACCGAGCTTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGCAGAGCTTCGTCATGCACATAAAACCATGGCTCAAGCTTTTGACAACCAAATGCCTCCTTTTATGTTCTCTGATGAGTCAGCTTCAGGGTCTTCTAGTTCTGAAGCTGAAGTCCACACACCAGAAATCCACCTCCCGAATCGTGCACTGCTCGATCGAGATGACTCGCACAAGGATTCGGCATGTTCAACATCAACAAACCAACATCCATTAAGAACAAAAGGAGACAATGAGCTAGAAAATTTAGAGGTTAGTGAAGGAGGAAGCATCAAACCACTAGTTTTTTCTGAAGGGGAATTGGATGACCATAGTTTGCAAAACGTATCCTCTCAGTTATCAAGTAAAGCTTATGATCACGAATCGCATGAGCTGGTTGAGTCGGGAAGTGACGAGAAATTGGATGTCGAACTTCAAAACTTAAGAAAGAGACTCAAACAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTTAAATACCAGAATTCTTTGGAGAAGTTATCTAGCTTAGAGAAAGAACTTAGTTCTGCTCAGAAAGATGCCGGCCGACTAGACGAACGAGCGAGCAAAGCCGAAATCGAAATAAAAATATTGAAGGAAGCCCTTATAGATCTGAAAGCAGAGAAGAATGCTGGTCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCCTAGAAAAGCTATTATTTGTAGCCCAACAAGATGCTGAAGCACATAATGAGAAATATGAACAATGCCTAAAGGAGATATCTGCTTTGGAGAAGAAAATCTCTCTTTCTGAAGATTATGCAAGAATGCTTGATGAACAAATGAGTAGTTCAGAGACTGAAGTCAAAGCACTGAAGATAGCTCTTGATGAACTGAAAGAAGAGAAGGAAATAGCATCCCGCCAGTATGAGCAGTGCTTGGAGAAGATTGCGAAAATGGAAGCTGTAATATCTTGTGCTCAAGACGACGCAAAACGTCTGAAAGGTGAGCTTATGATGGCTAAAGCAAAACTCGAGACAACCGAAGAAAGGTGTGCTCGTTTGGAGCAATCAAACCATTCACTGCAGTTTGATGCAGACAAACTTGTGCAGAAGATTGCTATTAAGGATCAAGAGCTTGCAGAAAAGCTAGATGAGTTGAAGAAAGTTCAGAGTCTAATGAACGACGAGCAGTGA 1431 41.23 MATLLHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATAELRHAHKTMAQAFDNQMPPFMFSDESASGSSSSEAEVHTPEIHLPNRALLDRDDSHKDSACSTSTNQHPLRTKGDNELENLEVSEGGSIKPLVFSEGELDDHSLQNVSSQLSSKAYDHESHELVESGSDEKLDVELQNLRKRLKQMEAEKEAFFLKYQNSLEKLSSLEKELSSAQKDAGRLDERASKAEIEIKILKEALIDLKAEKNAGLLQYNQCLQKISSLEKLLFVAQQDAEAHNEKYEQCLKEISALEKKISLSEDYARMLDEQMSSSETEVKALKIALDELKEEKEIASRQYEQCLEKIAKMEAVISCAQDDAKRLKGELMMAKAKLETTEERCARLEQSNHSLQFDADKLVQKIAIKDQELAEKLDELKKVQSLMNDEQ 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8997730 8999930 - CmaCh06G013860.1 Cma06g01386 296940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01386 476 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 327 476 - -
Cma06g01386 476 PANTHER PROTEIN NETWORKED 1D ISOFORM X1 1 331 - -
Cma06g01386 476 SUPERFAMILY Tropomyosin 228 462 - -
Cma06g01386 476 MobiDBLite consensus disorder prediction 136 167 - -
Cma06g01386 476 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779
Cma06g01386 476 Coils Coil 325 345 - -
Cma06g01386 476 Coils Coil 360 443 - -
Cma06g01386 476 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779
Cma06g01386 476 PANTHER PROTEIN NETWORKED 4A 327 476 - -
Cma06g01386 476 PANTHER PROTEIN NETWORKED 4A 1 331 - -
Cma06g01386 476 Coils Coil 220 296 - -
Cma06g01386 476 MobiDBLite consensus disorder prediction 136 150 - -
Cma06g01386 476 Gene3D - 299 474 - -
Cma06g01386 476 Coils Coil 458 476 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01386 - - - csv:101218746 681.019
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01386 Cma14g01737 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00760 Cma-Chr1:4101527 Cma06g01386 Cma-Chr6:8997730 1.93E-12 dispersed
Cma06g01386 Cma-Chr6:8997730 Cma14g01737 Cma-Chr14:12731630 5.45E-177 dispersed
Cma14g01736 Cma-Chr14:12730416 Cma06g01386 Cma-Chr6:8997730 3.80E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01386 Cma_Chr06 FPKM 8.750175 9.882339 12.883836 12.655686 14.524811 12.949755 12.956679 2.425894 1.467352 1.598152