Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01388 ATGGATACTCCGGAGAGGAAACAGATCGCCACTACTTCTGTCTCTAAATTTGAGGATTCCCCTGTTTTCAATTACATCAACAATCTATCACCGATCCAACCCGTAAAGTCTATACATACTACGCAGACATTCAACTCTCTTAGTTTTGCTTCCCTTCCATCAGTTTTTACTTCGCCACACGTTAGTTCATACAAGGAATCTAGATTCTTAAGAAGGCACAGTGTTGCAGATCTATCGAAACCGGACTTCGCTTCTGAAAATGGGAATAAAGTTGACACCAATGGAGGTGTTACTGGGAGTGTGTCTCAATTACAGGAGAACTCTAGTGCACCAGATGGAAACTCTGATTCACTTTCTAATCCAACCAAGCTTCCTTCTGTGCACCCATTGTCTACTAAAGAGGAGCCACAAGCTATGAAGAGCGATTCGGCTCGTCCAGACTGTGACCAAAAGCTACCAGATAGTGTTACAGAATCAGGTGAAGATCCAGCTTTAATTGAACCCTATGTTCACAACAAATCAGGAAATGGATCAGCTGAAGCTGAAGCTGAAGCGAATAAGCAAGTCGTAAGCCTCACTGAAGAAAGAGAGGCGACCGGTTATGATTGGGAAAGCTTAATTACTGAAGGCTCTGATCTTTTGATATTCAGCTCCCCCAATGGTTCAGAGGCTATCAGACTAGTTCAGAAACCATTAGACCTTGTGACAGGGTTTACTTCAAGTACCTTGTCTCAAATCATGGAAAATGACAATACCAATCTGTCGAAAATGAGAATTGCTGATCCAATAGAATCTAGTGGTGGACAGCAGGAAATAGAGTTTTTGTCATCTCAAGCTGGAGAGGCTCGTGAGCTAAAAGATATGGACCGTGCAATAGATAGCCTTTCTTTTCCAAACTCAAGTAACTCTATGAGTAGGGAAATAACAGATGATGAGGTGGCTAGATATATTACAGATGATTGTAAGCCAGTGTCTAATTTGTATCGGGGTATGCGGAGGCGCTGTCTGGACTTCGAGGCAGCAGTCAGTCGAAGAAAAAACTTAGAAGATGGTTCAACTAGTGGTTCTGTGTCGACACATCCAGAAGAGAAGATGCCATCCGTGGATAAACAGCTGGTCCCTTATAAAACCGGTGGTGTTGCAAGTCGATGCATTTTAACTGGAATAGGTTTACACTTAAATGCTTTGGCAACAGCGTCAAAGGATGCCAAAACTCTCAATCAAGAGAAGTTTTCGTCCGAGAAGCAGCTAAATTTGCCAAACTCGAGTGCTTCATGTCACTCTCCCTCAACTGGCCTGGATCCGCGCTTAACTTCGGTCGTTACTGAAAGGGATATGGACCCTTCAGAGAATGGGGTTCATAACGAGGAAGATGCTGTGAGGGCATCCGCTTATGTGCTTGTGGAGGACTTCAATCAAAATAGTCCCAAAAAGAAGAGGCGTCGGTTGGAACATGCTGGAGAAACTGAGTCGTCGTGCAAACGCTGTAATTGTAAAAAGTCGAAGTGTTTAAAACTTTACTGTGAATGCTTTGCTGCAGGCGTTTACTGTATCGAGCCATGCTCGTGTCAAGATTGCTTTAACAAACCTATTCATGAAGATACCGTTCTTGCAACTCGCAAACAGATTGAATCTCGCAATCCACTTGCATTTGCTCCCAAAGTGATCAGGAACTTGGACTCTCTTCCTGAGCCTGGGGACGAATCTAACAAAACCCCGGCATCTGCACGGCATAAAAGGGGATGCAACTGCAAGAAGTCAAGTTGCCTCAAGAAATACTGTGAATGCTATCAGGGCGGTGTTGGATGCTCCATCAGTTGCAGATGTGAGGGGTGTAAAAATGCATTTGGAAGAAAGGACGGGTCTTCTTTATTAGGATTAGAAACTGAACAAGAAGAAGAAGAACCAGAAACAAACCAAGCGAGTGCGATGGACGACAAAGCTTTGCACGGCCCTGAAATTCCGAATAATGAAGAACAGAACCCAGGTTCTGCTATTCCCTCAACACCATTACAGCACTGCAGGCAATTGGTTCCTCTACCCTTCTCCTCAAGGAGCAAACCGCTGCGTTCTTCTTTTCTCAACGTCGGATCCTCGTCTGGATTTTACACTGGCAACAAGCTCGAAAAGCCGAACATTCTCCAATCGCAACCGGATCCAGGGAAAAATACTCTTCCTGGTATGGAAGATGAAATGCCAGATATTCTTTGTGGCAATTGCTCTCCTGGTGCAGGCGTGAAGACTGGCTCCCCCAACAGTAAGAGGATATCTCCTCCTCAGAGCGACTTCGGGTTATCGCCATTACCACGAACAGGCCGGAAGTTGATATTGCAGTCGATTCCTTCTTTCCCTTCTCTCACCCCTCAACACTGA 2373 44.8 MDTPERKQIATTSVSKFEDSPVFNYINNLSPIQPVKSIHTTQTFNSLSFASLPSVFTSPHVSSYKESRFLRRHSVADLSKPDFASENGNKVDTNGGVTGSVSQLQENSSAPDGNSDSLSNPTKLPSVHPLSTKEEPQAMKSDSARPDCDQKLPDSVTESGEDPALIEPYVHNKSGNGSAEAEAEANKQVVSLTEEREATGYDWESLITEGSDLLIFSSPNGSEAIRLVQKPLDLVTGFTSSTLSQIMENDNTNLSKMRIADPIESSGGQQEIEFLSSQAGEARELKDMDRAIDSLSFPNSSNSMSREITDDEVARYITDDCKPVSNLYRGMRRRCLDFEAAVSRRKNLEDGSTSGSVSTHPEEKMPSVDKQLVPYKTGGVASRCILTGIGLHLNALATASKDAKTLNQEKFSSEKQLNLPNSSASCHSPSTGLDPRLTSVVTERDMDPSENGVHNEEDAVRASAYVLVEDFNQNSPKKKRRRLEHAGETESSCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLATRKQIESRNPLAFAPKVIRNLDSLPEPGDESNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSSLLGLETEQEEEEPETNQASAMDDKALHGPEIPNNEEQNPGSAIPSTPLQHCRQLVPLPFSSRSKPLRSSFLNVGSSSGFYTGNKLEKPNILQSQPDPGKNTLPGMEDEMPDILCGNCSPGAGVKTGSPNSKRISPPQSDFGLSPLPRTGRKLILQSIPSFPSLTPQH 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9004384 9009081 - CmaCh06G013880.1 Cma06g01388 296942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01388 790 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 494 529 IPR005172 -
Cma06g01388 790 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 580 615 IPR005172 -
Cma06g01388 790 SMART CXC_2 577 618 IPR033467 -
Cma06g01388 790 SMART CXC_2 491 532 IPR033467 -
Cma06g01388 790 MobiDBLite consensus disorder prediction 627 670 - -
Cma06g01388 790 MobiDBLite consensus disorder prediction 745 760 - -
Cma06g01388 790 MobiDBLite consensus disorder prediction 347 361 - -
Cma06g01388 790 MobiDBLite consensus disorder prediction 560 581 - -
Cma06g01388 790 ProSiteProfiles CRC domain profile. 492 617 IPR005172 -
Cma06g01388 790 MobiDBLite consensus disorder prediction 138 156 - -
Cma06g01388 790 MobiDBLite consensus disorder prediction 346 366 - -
Cma06g01388 790 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 790 IPR044522 GO:0003700
Cma06g01388 790 MobiDBLite consensus disorder prediction 407 432 - -
Cma06g01388 790 MobiDBLite consensus disorder prediction 710 770 - -
Cma06g01388 790 MobiDBLite consensus disorder prediction 80 184 - -
Cma06g01388 790 MobiDBLite consensus disorder prediction 86 127 - -
Cma06g01388 790 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 790 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01388 - - - cmax:111473091 1532.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01388 Cma14g01734 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00400 Cma-Chr5:1738700 Cma06g01388 Cma-Chr6:9004384 1.41E-27 dispersed
Cma06g01388 Cma-Chr6:9004384 Cma11g00619 Cma-Chr11:2966019 2.19E-32 dispersed
Cma14g01734 Cma-Chr14:12723480 Cma06g01388 Cma-Chr6:9004384 0 wgd
Cma17g00222 Cma-Chr17:1133318 Cma06g01388 Cma-Chr6:9004384 4.23E-15 wgd
Cma06g01388 Cma-Chr6:9004384 Cma08g01135 Cma-Chr8:6999599 1.30E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g539 . Blo12g00335 Bda03g00875 . . Bpe14g01204 Bma04g00774 . . . Cma06g01388 Cma14g01734 Car06g01197 Car14g01564 Sed02g1334 Cpe08g00275 Cpe03g01455 Bhi01g00774 Tan10g0801 Cmetu07g2311 . Hepe05g1577 . Lcy11g1571 . . . . . . . . Cone15ag0860 Cone7ag0270 Cone4ag0261 Lsi05g01627 . . Cme06g00586 Blo02g00527 Blo07g00229 Bda11g00591 Bda13g00106 . Bpe13g00593 . Bma06g01566 . Cmo06g01394 Cmo14g01773 . . . . . Cpe17g00155 . . . . . . . Cla05g00518 Cam05g0569 Cec05g0581 Cco05g0579 Clacu05g0566 Cmu05g0537 Cre05g0606 . Csa03g01301 Chy06g00555 Cme05g00473
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003693 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 7 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35268 PF03638 TCR 1.90E-11 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01388 Cma_Chr06 FPKM 7.086267 6.48541 1.15549 0.978542 13.014998 14.003096 13.495082 0.061601 0.0 0.088004
Cma06g01388 Cma_Chr00 FPKM 6.211657 5.858657 1.547459 1.470483 14.237477 14.80084 15.00191 0.154572 0.0 0.183072