Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01390 ATGGATTCGAAAGGAAATGAGGATAAATCGCTGAACTCGAAGGATGCTAGTATGGGAAGCATTAGCAGCAAAGATATGATATTTAGAGCAGATAAGATTGATTTGAAAAACCTGGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCCAAGAGAGTTGGCGTTGAGACACAAAAGCCTAAGGAGGAGTGGGAGATTGATTTGTCTAAACTCGATATTCGATATGTCGTTGCTCACGGGACTTACGGGACGGTGTTCAGGGGTACATATGACAATCAAGATGTTGCTGTAAAGCTATTGGACTGGGGGGAGGATGGTCTTGCCACATCTGCTGAAACTGCTGCTTTGCGTGCATCGTTTCAGCAAGAGGTTGCTGTCTGGCACAAGCTTGATCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAATGGCTCTTCGATGGATGGTCAAAATTCCCTTCCATCTAGAGCCTGCTGTGTTGTTGTTGAGTATCTTCCTGGTGGCACATTAAAACAATACTTGATAAGGAACAGGAAAAAGAAACTTGCCTTTAAGGTTGTGATTCAAATAGCTTTGCATCTCTCCAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTACACCGTGATGTCAAAACTGAAAATATGTTGTTAGATAGTCAAAGAACTCTCAAAATTGCTGATTTTGGGGTTGCCCGTGTCGAAGCTCAGAATCCAAGAGACATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTTCTTGATGGGAAGCCGTACAATAGAAGATGTGATGTCTACAGCTTTGGCATCTGCTTATGGGAAATTTACTGTTGTGATATGCCATACCCCGATCTTAGTTTTGCTGATGTCTCATCTGCTGTTGTTCGTCAGAACCTGCGACCTGATATCCCAAAGTGCTGTCCTAGTTCTCTGGCTAATGTGATGAAGAAATGCTGGGATGGCAACCCATCCAAACGCCCTGAAATGGATGAGGTTGTCAAAATGTTGGAAGGCATTGATACAAGTAAAGGAGGTGGGATGGTTTCTGATGACCAAGTCTCTAGGTGCTTCTGTTTCGGTACGCCCCGCGTGTCCCCGGAATGA 1146 44.24 MDSKGNEDKSLNSKDASMGSISSKDMIFRADKIDLKNLDMQLEKHLSRVWSKRVGVETQKPKEEWEIDLSKLDIRYVVAHGTYGTVFRGTYDNQDVAVKLLDWGEDGLATSAETAALRASFQQEVAVWHKLDHPNVTKFVGASMGATNLKIPSNGSSMDGQNSLPSRACCVVVEYLPGGTLKQYLIRNRKKKLAFKVVIQIALHLSRGLSYLHSKKIVHRDVKTENMLLDSQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPKCCPSSLANVMKKCWDGNPSKRPEMDEVVKMLEGIDTSKGGGMVSDDQVSRCFCFGTPRVSPE 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9017207 9020121 + CmaCh06G013900.1 Cma06g01390 296944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01390 381 Gene3D Phosphorylase Kinase; domain 1 61 153 - -
Cma06g01390 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 370 - -
Cma06g01390 381 ProSiteProfiles Protein kinase domain profile. 72 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01390 381 SUPERFAMILY Protein kinase-like (PK-like) 52 350 IPR011009 -
Cma06g01390 381 SMART serkin_6 72 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01390 381 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 10 370 - -
Cma06g01390 381 Pfam Protein tyrosine and serine/threonine kinase 76 350 IPR001245 GO:0004672|GO:0006468
Cma06g01390 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Cma06g01390 381 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672|GO:0006468
Cma06g01390 381 PRINTS Tyrosine kinase catalytic domain signature 173 186 IPR001245 GO:0004672|GO:0006468
Cma06g01390 381 PRINTS Tyrosine kinase catalytic domain signature 321 343 IPR001245 GO:0004672|GO:0006468
Cma06g01390 381 PRINTS Tyrosine kinase catalytic domain signature 211 229 IPR001245 GO:0004672|GO:0006468
Cma06g01390 381 CDD STKc_MAP3K-like 78 350 - -
Cma06g01390 381 Gene3D Transferase(Phosphotransferase) domain 1 176 367 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01390 Cma14g01733 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01390 Cma-Chr6:9017207 Cma11g01426 Cma-Chr11:9401145 0 dispersed
Cma14g01731 Cma-Chr14:12710656 Cma06g01390 Cma-Chr6:9017207 0 wgd
Cma17g01198 Cma-Chr17:8264821 Cma06g01390 Cma-Chr6:9017207 1.04E-27 wgd
Cma06g01390 Cma-Chr6:9017207 Cma08g00330 Cma-Chr8:1899823 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68661 PF07714 PK_Tyr_Ser-Thr 4.40E-60 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01390 - - jre:108989477 650.588