Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g01390 | ATGGATTCGAAAGGAAATGAGGATAAATCGCTGAACTCGAAGGATGCTAGTATGGGAAGCATTAGCAGCAAAGATATGATATTTAGAGCAGATAAGATTGATTTGAAAAACCTGGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCCAAGAGAGTTGGCGTTGAGACACAAAAGCCTAAGGAGGAGTGGGAGATTGATTTGTCTAAACTCGATATTCGATATGTCGTTGCTCACGGGACTTACGGGACGGTGTTCAGGGGTACATATGACAATCAAGATGTTGCTGTAAAGCTATTGGACTGGGGGGAGGATGGTCTTGCCACATCTGCTGAAACTGCTGCTTTGCGTGCATCGTTTCAGCAAGAGGTTGCTGTCTGGCACAAGCTTGATCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAATGGCTCTTCGATGGATGGTCAAAATTCCCTTCCATCTAGAGCCTGCTGTGTTGTTGTTGAGTATCTTCCTGGTGGCACATTAAAACAATACTTGATAAGGAACAGGAAAAAGAAACTTGCCTTTAAGGTTGTGATTCAAATAGCTTTGCATCTCTCCAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTACACCGTGATGTCAAAACTGAAAATATGTTGTTAGATAGTCAAAGAACTCTCAAAATTGCTGATTTTGGGGTTGCCCGTGTCGAAGCTCAGAATCCAAGAGACATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTTCTTGATGGGAAGCCGTACAATAGAAGATGTGATGTCTACAGCTTTGGCATCTGCTTATGGGAAATTTACTGTTGTGATATGCCATACCCCGATCTTAGTTTTGCTGATGTCTCATCTGCTGTTGTTCGTCAGAACCTGCGACCTGATATCCCAAAGTGCTGTCCTAGTTCTCTGGCTAATGTGATGAAGAAATGCTGGGATGGCAACCCATCCAAACGCCCTGAAATGGATGAGGTTGTCAAAATGTTGGAAGGCATTGATACAAGTAAAGGAGGTGGGATGGTTTCTGATGACCAAGTCTCTAGGTGCTTCTGTTTCGGTACGCCCCGCGTGTCCCCGGAATGA | 1146 | 44.24 | MDSKGNEDKSLNSKDASMGSISSKDMIFRADKIDLKNLDMQLEKHLSRVWSKRVGVETQKPKEEWEIDLSKLDIRYVVAHGTYGTVFRGTYDNQDVAVKLLDWGEDGLATSAETAALRASFQQEVAVWHKLDHPNVTKFVGASMGATNLKIPSNGSSMDGQNSLPSRACCVVVEYLPGGTLKQYLIRNRKKKLAFKVVIQIALHLSRGLSYLHSKKIVHRDVKTENMLLDSQRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPKCCPSSLANVMKKCWDGNPSKRPEMDEVVKMLEGIDTSKGGGMVSDDQVSRCFCFGTPRVSPE | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9017207 | 9020121 | + | CmaCh06G013900.1 | Cma06g01390 | 296944 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g01390 | 381 | Gene3D | Phosphorylase Kinase; domain 1 | 61 | 153 | - | - | |
Cma06g01390 | 381 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 10 | 370 | - | - | |
Cma06g01390 | 381 | ProSiteProfiles | Protein kinase domain profile. | 72 | 353 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g01390 | 381 | SUPERFAMILY | Protein kinase-like (PK-like) | 52 | 350 | IPR011009 | - | |
Cma06g01390 | 381 | SMART | serkin_6 | 72 | 350 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g01390 | 381 | PANTHER | KINASE ATMRK1, PUTATIVE-RELATED | 10 | 370 | - | - | |
Cma06g01390 | 381 | Pfam | Protein tyrosine and serine/threonine kinase | 76 | 350 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g01390 | 381 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 217 | 229 | IPR008271 | GO:0004672|GO:0006468 | |
Cma06g01390 | 381 | PRINTS | Tyrosine kinase catalytic domain signature | 277 | 299 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g01390 | 381 | PRINTS | Tyrosine kinase catalytic domain signature | 173 | 186 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g01390 | 381 | PRINTS | Tyrosine kinase catalytic domain signature | 321 | 343 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g01390 | 381 | PRINTS | Tyrosine kinase catalytic domain signature | 211 | 229 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g01390 | 381 | CDD | STKc_MAP3K-like | 78 | 350 | - | - | |
Cma06g01390 | 381 | Gene3D | Transferase(Phosphotransferase) domain 1 | 176 | 367 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g01390 | Cma14g01733 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01390 | Cma-Chr6:9017207 | Cma11g01426 | Cma-Chr11:9401145 | 0 | dispersed | |
Cma14g01731 | Cma-Chr14:12710656 | Cma06g01390 | Cma-Chr6:9017207 | 0 | wgd | |
Cma17g01198 | Cma-Chr17:8264821 | Cma06g01390 | Cma-Chr6:9017207 | 1.04E-27 | wgd | |
Cma06g01390 | Cma-Chr6:9017207 | Cma08g00330 | Cma-Chr8:1899823 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68661 | PF07714 | PK_Tyr_Ser-Thr | 4.40E-60 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g01390 | - | - | jre:108989477 | 650.588 |