Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01397 ATGGCACAGGGAAAGATGGTGATGGCTCTGCTTGCTGTTATCGTTGCCGTGCACTGGGCAGGAGCAGCGGCACAGTCGGACTGTACGAATGTGCTGATCAGCTTGTCACCGTGCCTGAATTACATTACAGGGAACTCTTCTACCCCATCACAAGGATGCTGCACACAGCTTGCAACCGTTGTCCGCTCACAACCACAGTGCTTGTGCCAGGTCCTGAATGGTGGTGGTTCCTCGCTTGGGGTCAACATCAACCAAACCCAGGCTCTGGCTCTGCCCCAGGCTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGTTGCTTCTCCCACCGGCTCTCCAGCAGGATCACCGGAATCTTCAAACAATGTTCCTTCAGGAACTGGATCTAAGACTGTTCCATCACCAGACAACAACTCATCAGACGGAAGCTCCATCCATTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTACATATGCTTCAGCTTTCAAGTTGTACTGA 510 51.18 MAQGKMVMALLAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQGCCTQLATVVRSQPQCLCQVLNGGGSSLGVNINQTQALALPQACNVQTPSISSCNVASPTGSPAGSPESSNNVPSGTGSKTVPSPDNNSSDGSSIHLSKPLLFSILLASTYASAFKLY 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9041588 9042558 + CmaCh06G013970.1 Cma06g01397 296951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01397 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 6 163 IPR043325 -
Cma06g01397 169 Pfam Probable lipid transfer 14 105 IPR016140 -
Cma06g01397 169 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Cma06g01397 169 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 6 163 - -
Cma06g01397 169 Gene3D - 25 109 IPR036312 -
Cma06g01397 169 SMART aai_6 28 105 IPR016140 -
Cma06g01397 169 MobiDBLite consensus disorder prediction 107 144 - -
Cma06g01397 169 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Cma06g01397 169 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869|GO:0008289
Cma06g01397 169 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869|GO:0008289
Cma06g01397 169 CDD AAI_LTSS 35 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01397 - - - csv:101204822 289.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01397 Cma-Chr6:9041588 Cma11g01640 Cma-Chr11:10790703 2.21E-22 dispersed
Cma20g00038 Cma-Chr20:164000 Cma06g01397 Cma-Chr6:9041588 2.16E-10 dispersed
Cma10g00983 Cma-Chr10:5102718 Cma06g01397 Cma-Chr6:9041588 4.77E-22 transposed
Cma14g01723 Cma-Chr14:12673060 Cma06g01397 Cma-Chr6:9041588 6.61E-105 wgd
Cma17g00224 Cma-Chr17:1141875 Cma06g01397 Cma-Chr6:9041588 1.15E-09 wgd
Cma02g01792 Cma-Chr2:10004750 Cma06g01397 Cma-Chr6:9041588 1.64E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01397 Cma_Chr06 FPKM 26.261204 23.903929 2.505676 2.48458 0.535604 0.619297 0.598865 0.223059 0.440951 0.292757
Cma06g01397 Cma_Chr00 FPKM 26.226727 24.188698 2.445236 2.431094 0.532209 0.543069 0.59602 0.222198 0.439402 0.283595
Cma06g01397 Cma_Chr00 FPKM 37.170673 39.049152 5.150487 7.078527 1.572953 1.370712 0.864007 0.858182 1.564238 0.99199