Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01401 ATGAAAACGGTCCTTTTTTCAACCTCGGCTTCTTCAAATTCAACCGCCACCGCCACCGCCATGGAAGAAGGCGAGCGATCGGAAGCCCGCGACAGATGTTACTATCCCGGTTGCCGGAAAGATGCGAATTGCAACTGCAAGATTTGCTTGGACAGTATCAACGCCACTTTGGACCTAATGTCTTACAGTGTTCAAAAAACCTCACTCATGAAGCTCTCTGCTTCGAGACCTAATGTTGAAGCCACTCCGATTTCATTTAATCCTTTGATTTTGACGACACCGCCATCGGGCACGTCTCGGACCATGAAGTACCCTAATTTTATATCTCCGGTGAAATTGAGTTTGGGATTCGAGGCTGAGGAAGAGGAAAGAGATTCAAGTTCGTTGCATCGATTTCTGACGTTGGTTTTTGTTCTGAGTTTGATCTTTGTGGTGACTATTGGATTTTCGTGTGCGATCGCTAGGGTTATTAGGCCGAACCTGTCAGTGTTCGTGCATGATTTGAATGGGAAATTGTGGGAGTTGCAGGGGATCGTGAATTTGAAGATTTCTAATTGCAGTTGCAAGGATTCCATGTGGGAAATTGATCAGGAGGGGATGCTCTTAAGTTCAAGGTGCACAATGTACAAATCAGCCATAGGGGCAGTGAGCTTATGGGGATGGCCTCTACAGACTGCTGGACTGTTTCGTACCGGATTTTCGCAACGATCAATCACGATCCTATCAGGCAGAATTAAACAGTGGTCTGATGGAGGGATCGATTTGGTGGTTCGAGAGGCGAACACTTCTTGGGTTCAGAAAGGATGGGGTGCCACATCTGTGCAAATTGATCCTCGTACATCGGTTCTCGAGTATCGACTAAGCTCAATGTTAGAGAACTCAAACTTAAATACAATGGCTGCAGATTTCTTCAAACATTGGATGTCAAAAGTCATAAGAAGACTGAAAAACAAGCTTTGGATGTTTTTGGATGTTGAAACCATGTTTCATCAAACTAGAGCTACACATGATTTTAAGACTCCAACATGA 1029 44.61 MKTVLFSTSASSNSTATATAMEEGERSEARDRCYYPGCRKDANCNCKICLDSINATLDLMSYSVQKTSLMKLSASRPNVEATPISFNPLILTTPPSGTSRTMKYPNFISPVKLSLGFEAEEEERDSSSLHRFLTLVFVLSLIFVVTIGFSCAIARVIRPNLSVFVHDLNGKLWELQGIVNLKISNCSCKDSMWEIDQEGMLLSSRCTMYKSAIGAVSLWGWPLQTAGLFRTGFSQRSITILSGRIKQWSDGGIDLVVREANTSWVQKGWGATSVQIDPRTSVLEYRLSSMLENSNLNTMAADFFKHWMSKVIRRLKNKLWMFLDVETMFHQTRATHDFKTPT 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9056600 9057827 + CmaCh06G014010.1 Cma06g01401 296955

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01401 342 PANTHER SIGMA 1-TYPE OPIOID RECEPTOR-RELATED 30 336 IPR006716 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01401 - - - csv:101220408 499.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01401 Cma14g01715 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01715 Cma-Chr14:12653435 Cma06g01401 Cma-Chr6:9056600 2.97E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g519 . . . . . . . . . . Cma06g01401 Cma14g01715 Car06g01209 Car14g01549 Sed02g1307 Cpe08g00266 Cpe03g01441 Bhi01g00797 Tan10g0831 Cmetu06g2774 . Hepe05g1559 . Lcy11g1552 . . . . . . . . . Cone7ag0261 Cone4ag0250 Lsi05g01612 . . Cme06g00602 . . Bda11g00581 . . Bpe13g00603 . Bma06g01559 . Cmo06g01405 Cmo14g01757 . . . . . . . . . . . . . Cla05g00535 Cam05g0586 Cec05g0596 Cco05g0594 Clacu05g0583 Cmu05g0553 Cre05g0622 . Csa03g01319 Chy06g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006897 2 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01401 Cma_Chr06 FPKM 1.741299 1.627575 0.607977 0.0 5.099046 7.299564 6.548586 0.381062 0.200367 0.314088
Cma06g01401 Cma_Chr00 FPKM 1.983968 0.0 0.0 0.125023 1.445221 2.704668 2.605638 0.173886 0.0 0.0