Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01402 ATGGAAACGCTCAGCCACACAACCTCCATCCTGCCTCTTCAACTTCCCCCATACCCCACCAGACCCAACGCTCTCTCCGCCGCTCTCTCCTCCGCCACCAGCCTCCTCCACATCAAACAAGTCCACGCTCAAATCCTCCGCTCCAAATTCGAACGCTCCGATTCCGATTCCCTTCTTTTCAAACTGATTCTTTCCTCTTGTGCTCTCTCGCCCAGCCTCGACTATGCCCTCTCTGTGTTCGATCAAATTCCTGAGCCCAAGACCCGTTTCTGCAACAAGCTTCTGCGTGAATTATCTCGAGGTTCTGAGCCAGAGAATGCGCTTTTTGTATACGAGAAGATGAGGGCTGAGGGTCTGAGTTTGGATAGGTTCTGCTTCCCACCCCTGTTAAAAGCGGCTTCGCGGAATCTTTCCTTGAGAACTGGGATGGAGATTCATGGACTCGCGTCGAAGCTGGGATTTGGTTCAGACCCATTTGTGGAGACGGGGTTGATTAGAATGTATGCTGCCTGTAGAAGGATAATGGAAGCCCGGTTGGTGTTTGATAAAATGTCTCAGAGGGATGTCGTCACTTGGAGCATCATGATTGATGGGTATTGCTTAAGTGGTTATTATGATCTGGCCTTTCAACTCTTTGAAGAAATGAAGAGAACAGGCTTGGAACCAGATGAAATGATTCTTTCAACTATTCTTTCTGCCTGCGCCCGAGCTGGAAATTTGGATTTTGGAACAAAAATACACGAGTTCATAACTAAGAAGAATATTGTCATGGATCCTCACTTACAAAGTGCTCTCATCAAGATGTATGCAAGTTATGGCTCCACGGACTTGGCTTGGGATCTGTATGAAAAGATATCCCCTAAGAACATGGTTATTTCGACTGCCATGGTTTCTGGGCTTGCAAAAGGTGGACAGATTGGTGATGCTCGCTATGTGTTTGATCAAATGGTGGAGAAGGACTTGATATGTTGGAGTGCAATGATTTCTGGATATACTGAGAGTGATTGCCCTCAAGAGGCTCTTGTACTGTTCAAGAAAATGCAACAAATGGGAATGAAACCTGATGTAGTCACCATGTTGAGTGTCATCTCAGCTTGTGCTCATCTTGGTGCATTAGATCAAGCCAAATGGATCCAAATTTATGTTGATAAAAATGGGTTCGGCAAGGCATTGTCTATCAATAATGCACTCATTGATATGTATGCCAAATGTGGGAGTCTAGAAGGAGCGAGAGAAATCTTTGGAAAGATGCCAAAGAAAAATGTTATATCTTGGACGAGTATGATTAATGCTCTTGCAATGCATGGAGATGCTCACAATGCCTTAAGTCTATTCCATCAAATGAAAGTTGAAAACGTTGAGCCTAATTGGATCACATTTGTGGGGTTGCTTTATGCTTGTAGCCATGGAGGTCTAGTTAAGGAGGGCCAAAGAATATTCCACTCGATGATCAATGAGTATGGCATAAGTCCCAAGCACGAACATTTTGGTTGCATGGTTGACCTCTTTGGCCGTGCAAAATTGCTGAGAGAAGCTCTTGAGGTGGTAGAAGCAATGCCATTTGCTCCTAATGCTATTATTTGGGGATCCCTTATGGCTGCTTGTCAGCTCCATAGTGACACTGAGTTGGGAGAATTTGCCGCTAAACAAGTTCTCAAGCTCGAGCCGGATCACGATGGCGCCCTTGTTGTCTTATCGAACATATATGCTAAAGAAAGAAGATGGGAAGACGCTGGGGAGGTTAGAAAACTTATGAACGAGATGGGCGTTTCAAAGGAGAGAGGATGCAGTAGAATTGAATTGAACAATGAGGTGCATGAATTTCAAATGGCAGATAGAAAACACAAGCAAGCTGATCTAATATATCACAAGTTAAATGAGGTAGTTCAGAAGTTGAAGCTGGCTGGTTATACACCACAGACTAACTGTGTGCTCGTTGATTTAGACGAAGAGGAAAAGAAGGAATTAGTCCTCTGGCACAGTGAGAAACTGGCATTGTGCTATGCCCTTATGAATGAAGGGTCACGCATTTGCATTACAAAGAACCTTCGGATTTGTGAGGATTGTCATGCTTTTATGAAATTAGCCTCAAAGGTGTATGCCAGAGAGATTGTCGTCCGGGACAGAACTCGGTTTCACCATTACAGAGACGGTTCGTGTTCTTGTAAAGACTACTGGTGA 2181 44.43 METLSHTTSILPLQLPPYPTRPNALSAALSSATSLLHIKQVHAQILRSKFERSDSDSLLFKLILSSCALSPSLDYALSVFDQIPEPKTRFCNKLLRELSRGSEPENALFVYEKMRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLIRMYAACRRIMEARLVFDKMSQRDVVTWSIMIDGYCLSGYYDLAFQLFEEMKRTGLEPDEMILSTILSACARAGNLDFGTKIHEFITKKNIVMDPHLQSALIKMYASYGSTDLAWDLYEKISPKNMVISTAMVSGLAKGGQIGDARYVFDQMVEKDLICWSAMISGYTESDCPQEALVLFKKMQQMGMKPDVVTMLSVISACAHLGALDQAKWIQIYVDKNGFGKALSINNALIDMYAKCGSLEGAREIFGKMPKKNVISWTSMINALAMHGDAHNALSLFHQMKVENVEPNWITFVGLLYACSHGGLVKEGQRIFHSMINEYGISPKHEHFGCMVDLFGRAKLLREALEVVEAMPFAPNAIIWGSLMAACQLHSDTELGEFAAKQVLKLEPDHDGALVVLSNIYAKERRWEDAGEVRKLMNEMGVSKERGCSRIELNNEVHEFQMADRKHKQADLIYHKLNEVVQKLKLAGYTPQTNCVLVDLDEEEKKELVLWHSEKLALCYALMNEGSRICITKNLRICEDCHAFMKLASKVYAREIVVRDRTRFHHYRDGSCSCKDYW 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9057700 9060542 - CmaCh06G014020.1 Cma06g01402 296956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01402 726 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Cma06g01402 726 TIGRFAM PPR: pentatricopeptide repeat domain 294 321 IPR002885 -
Cma06g01402 726 TIGRFAM PPR: pentatricopeptide repeat domain 395 421 IPR002885 -
Cma06g01402 726 TIGRFAM PPR: pentatricopeptide repeat domain 322 356 IPR002885 -
Cma06g01402 726 TIGRFAM PPR: pentatricopeptide repeat domain 190 224 IPR002885 -
Cma06g01402 726 Pfam PPR repeat family 187 236 IPR002885 -
Cma06g01402 726 Pfam PPR repeat family 319 367 IPR002885 -
Cma06g01402 726 Pfam PPR repeat family 420 467 IPR002885 -
Cma06g01402 726 Pfam DYW family of nucleic acid deaminases 636 726 IPR032867 GO:0008270
Cma06g01402 726 PANTHER - 208 305 - -
Cma06g01402 726 PANTHER - 22 217 - -
Cma06g01402 726 PANTHER - 302 719 - -
Cma06g01402 726 Pfam E motif 538 600 IPR046848 -
Cma06g01402 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Cma06g01402 726 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 302 719 - -
Cma06g01402 726 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 208 305 - -
Cma06g01402 726 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 22 217 - -
Cma06g01402 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Cma06g01402 726 Gene3D Tetratricopeptide repeat domain 248 385 IPR011990 GO:0005515
Cma06g01402 726 SUPERFAMILY TPR-like 268 581 IPR011990 GO:0005515
Cma06g01402 726 Gene3D Tetratricopeptide repeat domain 391 626 IPR011990 GO:0005515
Cma06g01402 726 Gene3D Tetratricopeptide repeat domain 90 247 IPR011990 GO:0005515
Cma06g01402 726 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Cma06g01402 726 Pfam PPR repeat 496 519 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01402 - - - bhj:120088878 1335.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01402 Cma-Chr6:9057700 Cma17g00868 Cma-Chr17:6671198 0 dispersed
Cma16g00633 Cma-Chr16:3265872 Cma06g01402 Cma-Chr6:9057700 9.77E-41 transposed
Cma18g00400 Cma-Chr18:2198643 Cma06g01402 Cma-Chr6:9057700 1.57E-18 transposed
Cma14g01714 Cma-Chr14:12651874 Cma06g01402 Cma-Chr6:9057700 7.74E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g518 . . . . . . . . . . Cma06g01402 . Car06g01210 . . Cpe08g00265 . Bhi01g00798 . . . . . . . . . . . . . Cone14ag0857 . . . Lsi05g01611 . . . . . . . . . . . . Cmo06g01406 . . . . . . . . . . . . . . Cla05g00537 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014354 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01402 Cma_Chr06 FPKM 0.460099 0.701352 1.073516 0.807501 5.85937 6.100056 6.406638 1.508973 1.506418 1.772417
Cma06g01402 Cma_Chr00 FPKM 0.542548 0.779803 1.230829 1.019906 6.925166 7.271653 7.467302 1.700279 1.813291 2.160189