Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01407 ATGGAGCCAAATAATGGATTAACCTCAACCAATCACAAGGCAGGATCTATCTCCAGTCTCCAAATGGCTATATCGTCGGTGTTTTCTCGGTGGGACGGCCTTCAAATGGCCATTGATAACAAATGGGGCGGTGGCGATTCTCACCAGAAATCGCTGAATCTCGCCTCAGATGTTTTCACTTGGTTCTCTCAATCCAAACCTCCCCTGTACGTGGACGATCTGGAAAATTTGCTCCATGAACACCTGCTTCTCTCCTTCAACACCGAGATCGAAGATGGTAGCATCGAACAGGTAGCAGAGAAATTGATGATGTTCGATGCTCTTAATTTGATTTCTCGACATGAAAGACTTATGAATTAA 360 44.72 MEPNNGLTSTNHKAGSISSLQMAISSVFSRWDGLQMAIDNKWGGGDSHQKSLNLASDVFTWFSQSKPPLYVDDLENLLHEHLLLSFNTEIEDGSIEQVAEKLMMFDALNLISRHERLMN 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9077529 9078376 - CmaCh06G014070.1 Cma06g01407 296961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01407 119 PANTHER UNCHARACTERIZED 7 110 IPR019398 -
Cma06g01407 119 Pfam Pre-rRNA-processing protein TSR2 21 100 IPR019398 -
Cma06g01407 119 PANTHER PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN 7 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01407 K14800 TSR2; pre-rRNA-processing protein TSR2 - csv:101221113 175.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01407 Cma-Chr6:9077529 Cma09g00571 Cma-Chr9:2592745 9.58E-30 dispersed
Cma06g01405 Cma-Chr6:9071507 Cma06g01407 Cma-Chr6:9077529 1.56E-17 proximal
Cma06g01407 Cma-Chr6:9077529 Cma06g01409 Cma-Chr6:9081319 2.30E-68 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g512 . . . . . Bpe14g01190 . . . . Cma06g01407 . Car06g01213 . Sed12g0923 . . Bhi01g00807 Tan10g0840 Cmetu06g2304 . . . Lcy11g1548 . . . . . . . . . . . . . . Cme06g00607 . . . . . . . . . Cmo06g01410 . . . . . . . . . . . . . . Cla05g00541 Cam05g0590 Cec05g0600 Cco05g0598 Clacu05g0587 Cmu05g0557 Cre05g0626 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014315 0 1 0 0 1 1 1 0 1 0 1 0 2 1 1 1 0 1 1 0 0 1 0 1 1 0 1 1 1 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01407 Cma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.227806 0.414663 0.0