Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01412 ATGCACCTGTTTTGCTTGCGGCTTCGACTGAGATTAGGTTTTAATGCTTTTAATTTCTTAGCGGATCATGCACCTGTTTTGCTTGCGGCTTCGACTGAGATTAGGAGAGGGTTTTCTTTAATTAGTCCTCACTTTGTATTGAGGGCCTGCAGTTTTGGCTCAAAAGCATTAGCCAAGGGAATCCTTGGAAGCGAGAATGAAAGGGTAGCTCATTCAGATAGCATTGTAAATGGTTCATCCACGACTCAGCCATCTCCACTGTTTCCTGAGGGTAAACCTCATTCGGTTGCTTATGATGTTGAACTTATAGACGATGATACTTGGGCAGTTTCATTTAGTTTAGCTCGAGCATGGGAAGGGAGAGAGAAGGGCTCATCTGGCTTTGATAATAGATACTTCTTAGAGGATGAAGATCATGATCCAATTGATTATTGTGATTCAGAGTTTGATGATATTGACAACATGAGAATCCGGGGAAATCTCTTCTATAAACTTGATCGAGGTTCCAAAGAGTTTGAAGAATATAGCTTTGATTTTCATCGGAAGAAAAAATCTATAAAGGAAAAGGAAGATACGCAGCAAAACAAAAGTAAAGTGAATGATAAACCCAATAATCATTTGGCAAGTGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAATTGAAAGGGAGAACAATGACTTTGAGAAGAAGCTTAGGACACCCACGTTTAATCAGCTTACTGCTCCTTACCATGAGCCATTTTGTCTTGATATATACATATCAAAAGCCTCTGTTCGAGCCTGCATCATTCACCGGGTCACCAGTAAGGTGGTTGCTGTGGCACATTCAATTTCTAAGGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTGCTGCTGTGGGGGCCGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGGTATACACTCCAAGAAAAGGCGAGAGGATAGAAGGGAAGCTTCAAATCGTGCTTCAGTCTGTCATTGATAATGGGATTAATGTGAAAGTAAAGATTAAGCAGCAAAAGAGACCCAGAAAAATCAAAATGGCAAGCGCAAGTGAGAGTGAACGCAAGGAACCTGTAAATGAGCAAATGGTTGCAAACATGTACGGTGCTTTAAGGTCTGAGCTTAATCAGATATATTCAAAAATCACAGAACTTGAAATGGAAGCGAGCGAGCACTCTCTTGTCATTTCTGCAATCGAACCACTTGATCCATCAAGAAGATGCTACAGAATGATTGGGGGAGTGCTGGTGGAAAGAACTATCAAGGAGGTTCTGCCCGCCGTTCAACACAACAAAGAGGGAATCGAGGAGGTCATTTCCAGACTCAATGAGGCCTTGGAGAAGAAAAAGAAGGAGATTGTTGACTTGGAGGCCAAATACAAGATCAAGATTAGAAAGCCTGATGGCGAGGCTAAGGAGGAAGACAGTGGGCGGAAAGAAGGTGCAGCTCAAGGAGTCCTCGTAGGCCCTGCAGATTACCTCTTCACCAATGCATCAGTTTGA 1545 42.46 MHLFCLRLRLRLGFNAFNFLADHAPVLLAASTEIRRGFSLISPHFVLRACSFGSKALAKGILGSENERVAHSDSIVNGSSTTQPSPLFPEGKPHSVAYDVELIDDDTWAVSFSLARAWEGREKGSSGFDNRYFLEDEDHDPIDYCDSEFDDIDNMRIRGNLFYKLDRGSKEFEEYSFDFHRKKKSIKEKEDTQQNKSKVNDKPNNHLASGHVKLPEHVKNKYVIIERENNDFEKKLRTPTFNQLTAPYHEPFCLDIYISKASVRACIIHRVTSKVVAVAHSISKDMKFDLTSRKDSSACAAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDNGINVKVKIKQQKRPRKIKMASASESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPSRRCYRMIGGVLVERTIKEVLPAVQHNKEGIEEVISRLNEALEKKKKEIVDLEAKYKIKIRKPDGEAKEEDSGRKEGAAQGVLVGPADYLFTNASV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9087675 9091473 - CmaCh06G014120.1 Cma06g01412 296966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01412 514 MobiDBLite consensus disorder prediction 186 209 - -
Cma06g01412 514 CDD Ribosomal_L18_L5e 248 344 - -
Cma06g01412 514 SUPERFAMILY Translational machinery components 235 344 - -
Cma06g01412 514 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 254 345 IPR005484 GO:0003735|GO:0005840|GO:0006412
Cma06g01412 514 Gene3D - 230 345 - -
Cma06g01412 514 PANTHER EXPRESSED PROTEIN 76 358 - -
Cma06g01412 514 SUPERFAMILY Prefoldin 379 476 - -
Cma06g01412 514 Coils Coil 382 402 - -
Cma06g01412 514 Pfam Prefoldin subunit 376 479 IPR002777 GO:0006457|GO:0016272|GO:0051082
Cma06g01412 514 Gene3D - 373 481 IPR009053 -
Cma06g01412 514 Coils Coil 446 480 - -
Cma06g01412 514 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 76 358 IPR005484 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01412 K02881 RP-L18, MRPL18, rplR; large subunit ribosomal protein L18 - csv:101213193 540.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01412 Cma-Chr6:9087675 Cma15g00005 Cma-Chr15:21096 3.87E-23 dispersed
Cma14g01706 Cma-Chr14:12626758 Cma06g01412 Cma-Chr6:9087675 3.72E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g503 . . . . . . . . . . Cma06g01412 . Car06g01218 . . . . Bhi01g00816 . . . Hepe05g1549 . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01414 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01412 Cma_Chr06 FPKM 8.260841 10.483662 8.430778 8.926908 9.554697 9.070923 9.798198 11.636955 13.973397 12.504185