Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01417 ATGGCGATGGCCGCTCAAGCAACCCTCTTCACCCCATCTCTCACAACCCCCAAATCCACCGCCACCGCCGTCCCCTGGAAGCAATCCCCAACTCTCTCCTTCCTCAACGCCAAGCCCCTCAACCTCGCCTCCTCTTCCCGACTCGTCAAAGTCTCCGCCGAGGCCGAGGCCGCAGCTGCAGAAGCTCCAGCCGGATTCTCCCCGCCAGAGCTCGACCCAAGCACCCCTTCCCCAATCTTCGCCGGCAGCACCGGGGGGCTGCTCCGGAAGGCCCAGGTCGAGGAATTCTACGTCATCACATGGGAATCCCCCAAGGAGCAAATCTTCGAAATGCCAACAGGCGGCGCCGCCATCATGAGACAAGGCCCAAATCTGCTGAAATTGGCTAGAAAAGAGCAGTGCTTGGCGCTGGGGACGAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTTTTTCCCAACGGAGAAGTACAGTATTTGCATCCCAAAGACGGTGTCTATCCAGAGAAGGTGAATCCAGGCAGGGAAGGAGTGGGGCAGAACTTCAGGTCCATTGGGAAGAATGTGAGCCCCATTGAGGTCAAGTTCACTGGAAAACAAGTGTATGATTTGTAA 624 56.09 MAMAAQATLFTPSLTTPKSTATAVPWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAAEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9123630 9124253 - CmaCh06G014170.1 Cma06g01417 296971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01417 207 Gene3D Photosystem I PsaD, reaction center subunit II 65 207 - -
Cma06g01417 207 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED 1 207 IPR003685 GO:0009522|GO:0009538|GO:0015979
Cma06g01417 207 Pfam PsaD 75 205 IPR003685 GO:0009522|GO:0009538|GO:0015979
Cma06g01417 207 SUPERFAMILY Photosystem I subunit PsaD 72 206 IPR036579 GO:0009522|GO:0009538|GO:0015979
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01417 K02692 psaD; photosystem I subunit II - csv:101207214 367.081
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01417 Cma14g01696 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01696 Cma-Chr14:12598569 Cma06g01417 Cma-Chr6:9123630 1.03E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g477 . . . . . Bpe14g01181 . . . . Cma06g01417 Cma14g01696 Car06g01223 Car14g01527 Sed02g1247 Cpe08g00254 Cpe03g01427 Bhi01g00824 Tan10g0856 Cmetu06g1314 . Hepe05g1539 . Lcy11g1530 . . . . . . . . . . . Lsi05g01428 . . Cme06g00618 Blo02g00545 . . Bda13g00131 . Bpe13g00612 . . . . Cmo14g01741 . . . . . . . . . . . . . Cla05g00554 Cam05g0604 Cec05g0613 Cco05g0611 Clacu05g0600 Cmu05g0570 Cre05g0639 . Csa03g01342 Chy06g00588 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009195 1 1 1 0 2 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01417 Cma_Chr06 FPKM 1.351763 1.124195 58.527828 59.304634 320.252991 306.091156 315.771301 44.288158 47.162907 42.056274
Cma06g01417 Cma_Chr00 FPKM 1.351763 1.124195 58.648094 59.246109 319.941864 306.388397 315.771301 44.286827 47.162907 42.056274