Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01423 ATGGAGCTTCCGAAGCGCGTAGATCAGAATCTTCCAGAGAGGAAAGGCCACAAGCGGAAACTGGAGGAGGAATTTGAGGAAGAACGGGGGATCTCTGTTCCTACTGGGGATGCCAAGCGAGCGTTACTCAGCGAGGTCAGTGCTCAAAGAACGGGGGATCTCTGTTCCTACTGGGGATGCCAAGCGAGCGTTACTCAGCGAGTTCAAATTCTCAATTCCACTTTTTCATGGAAGGAACCCGATCGAGCTGCTGCTAAGCGAGCTACTCATGTTCTTGCCGAGCTTGCTAAGAACGAAGAGGTAGTGAACGTGATTGTGGAAGGTGGAGCAGTGCCGGCTTTAGTTAAGCATTTACAAGCACCGCCTATTGTTGAAGGTGATCGCAGTCTTAAGCCATTTGAACACGAGGTTGAGAAAGGAAGTGCTTTTGCGCTTGGACTACTGGCTGTAAAGCCAGAGCACCAGCAACTGGTTGTTGACATTGGTGCTTTGTCACACCTCGTTGAGCTATTGAAGAGACACAAGGAAGGTTCTTCTCGTGCTAGACACAAGGAAGGTTCTTCTCGTGCTGTAAATAGTGTTATTCGTAGAGCTGCAGATGCTATTACAAATCTTGCCCATGAGAATAGTTGCATTAAAACACGGGTTAGGATGGAAGGTGGAATTCCTCCTCTTGTTGAATTGCTTGAATTTACGGACACAAAGGTACAAAGAGCTGCTGCTGGGGCATTACGAACACTGGCCTTTAAGAATGATGAGAACAAAAATCAGATCGTTGAGTGCAATGCTCTCCCTACGCTCATTTTGATGCTTCGGTCAGAGGATGCTGCTATTCATTACGAAGCGGTTGGTGTTATTGGAAATCTGGTGCACTCATCCCCAAATATAAAGAGAGAAGTTCTCCATGCTGGAGCTTTGCAACCTGTTATTGGATTACTCAGTTCTTGCTGCTCTGAGAGCCAAAGGGAGGCAGCTTTATTACTTGGACAATTTGCGGCAACTGATTCAGATTGTAAGATTCACATTGTACAGAGGGGTGCTGTTCGACCCTTAATTGAGATGCTTCAATCACCTGATGTACAGCTACGAGAAATGTCAGCTTTTGCATTGGGTAGATTGGCACAGGAAACTCATAATCAAGCGGGTATTGCTCATAATGGTGGTCTAATGCCATTACTGAAGCTTCTCGATTCGAAAAATGGTTCTTTGCAACATAATGCAGCATTTGCTCTTTATGGTCTTGCGGATAATGAGGATAATGTATCTGATTTTATTAGGGTGGGAGGAGTTCAGAAGCTGCAAGATGGAGAATTTATAGTGCAAGCAACAAAAGATTGTGTAGCAAAGACAGTCAAGAGATTGGAGGAGAAAATACATGGAAGGGTCTTGAATCACTTGTTACATCTAATGCGTGTAGCTGAGAAGGCTGTGCAAAGACGAGTGTCTCTTGCTCTTGCTCATCTTTGTCTGGAGTTGCTTCTTGGCCTGCTTGGTTCTTCAAGTCTCAAGCAGCAGCTTGATGGTGCTGTTGCTCTGTACAAGCTGGCAAATAAAGCCATGACTCTTTCTCCTGTAGATGCCGCTCCACCATCTCCAACACCACAGGTTTACCTTGGGGAGCAGTATGTGAACAATTCTACATTGTCTGATGTGACTTTTCTTGTTGAAGGAAGACGCTTCCATGCCCACAGAATTTGCTTGCTTGCTTCTTCAGATGCATTCCGTGCAATGTTTGATGGTGGCTATCGGGAAAAAGATGCAAAGGATATAGAAATTCCAAATATTAGATGGGAAGTTTTTGAGCTAATGATGAGATTTGTTTACACTGGATCTGTGGATGTTTCGTTGGATATTGCACAAGATCTCCTGAGAGCTGCCGATCAGTATCTCTTGGAGGGACTTAAACGATTGTGCGAATATACCATTGCACAGGATATATCATTGGAAAATGTTGCAAGCATGTACGAACTTTCAGAAGCCTTTAATGCCATATCTTTGAGGCACACGTGCATCCTTTTTATCTTGGAACAATTTGATAAACTCAGCGCAATGCCAGGGCACTCTCATCTAATTCAGCGCATACTTCCCGAGATCCGCAACTATTTTACAAAAGCCCTGACCAAGCCTAACCTCCATGGCTCACGATTAGATTTCACGTGA 2160 44.68 MELPKRVDQNLPERKGHKRKLEEEFEEERGISVPTGDAKRALLSEVSAQRTGDLCSYWGCQASVTQRVQILNSTFSWKEPDRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPPIVEGDRSLKPFEHEVEKGSAFALGLLAVKPEHQQLVVDIGALSHLVELLKRHKEGSSRARHKEGSSRAVNSVIRRAADAITNLAHENSCIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLHAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQETHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTVKRLEEKIHGRVLNHLLHLMRVAEKAVQRRVSLALAHLCLELLLGLLGSSSLKQQLDGAVALYKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNSTLSDVTFLVEGRRFHAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFVYTGSVDVSLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVASMYELSEAFNAISLRHTCILFILEQFDKLSAMPGHSHLIQRILPEIRNYFTKALTKPNLHGSRLDFT 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9145973 9153039 + CmaCh06G014230.1 Cma06g01423 296977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01423 719 SMART arm_5 98 150 IPR000225 GO:0005515
Cma06g01423 719 SMART arm_5 376 416 IPR000225 GO:0005515
Cma06g01423 719 SMART arm_5 293 333 IPR000225 GO:0005515
Cma06g01423 719 SMART arm_5 208 249 IPR000225 GO:0005515
Cma06g01423 719 SMART arm_5 151 207 IPR000225 GO:0005515
Cma06g01423 719 SMART arm_5 335 375 IPR000225 GO:0005515
Cma06g01423 719 SMART arm_5 251 291 IPR000225 GO:0005515
Cma06g01423 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Cma06g01423 719 MobiDBLite consensus disorder prediction 1 25 - -
Cma06g01423 719 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 8 711 - -
Cma06g01423 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 220 255 IPR000225 GO:0005515
Cma06g01423 719 CDD BTB_POZ_ARIA_plant 536 651 - -
Cma06g01423 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 262 304 IPR000225 GO:0005515
Cma06g01423 719 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
Cma06g01423 719 Gene3D - 294 524 IPR011989 -
Cma06g01423 719 ProSiteProfiles BTB domain profile. 549 616 IPR000210 GO:0005515
Cma06g01423 719 Pfam BTB/POZ domain 542 644 IPR000210 GO:0005515
Cma06g01423 719 SUPERFAMILY ARM repeat 68 434 IPR016024 -
Cma06g01423 719 Gene3D - 60 182 IPR011989 -
Cma06g01423 719 Gene3D - 183 293 IPR011989 -
Cma06g01423 719 Gene3D Potassium Channel Kv1.1; Chain A 530 675 IPR011333 -
Cma06g01423 719 Pfam Armadillo/beta-catenin-like repeat 216 248 IPR000225 GO:0005515
Cma06g01423 719 Pfam Armadillo/beta-catenin-like repeat 335 374 IPR000225 GO:0005515
Cma06g01423 719 Pfam Armadillo/beta-catenin-like repeat 251 290 IPR000225 GO:0005515
Cma06g01423 719 SMART BTB_4 549 646 IPR000210 GO:0005515
Cma06g01423 719 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 8 711 IPR044282 -
Cma06g01423 719 SUPERFAMILY POZ domain 540 643 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01423 - - - cmax:111479276 1217.22
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01423 Cma14g01691 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01423 Cma-Chr6:9145973 Cma06g01441 Cma-Chr6:9246578 1.44E-17 dispersed
Cma02g00211 Cma-Chr2:937806 Cma06g01423 Cma-Chr6:9145973 3.99E-06 transposed
Cma14g01691 Cma-Chr14:12565073 Cma06g01423 Cma-Chr6:9145973 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35270 PF00651 BTB 7.50E-26 CL0033 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01423 Cma_Chr06 FPKM 8.91907 8.030712 6.729205 7.872406 12.503484 12.445724 12.536209 10.136259 9.20462 10.175218
Cma06g01423 Cma_Chr00 FPKM 5.783578 6.088989 5.95894 6.555654 8.759931 9.414587 8.924722 7.643965 6.910172 7.702634