Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01424 ATGGACTTTGAAAACACAAATTTGGAATGTAGACCATTGTCGATCAAATTGTGGCCTCCTAGTGACAATACCCGGAATATGCTTGTGGAACGGATGACATCTAACCTTACCAGCAAATCCTTTTTCACCCAGAAGTATGGTACTCTTAGTCGGGAAGAGGCCACAGATGAGTCGAAGAGAATTGAAGACATTGCTTTTGCTACAGCTAATCAGAACTATGAAAACCAGCCTGATGGTGATGGAAGTGCTGCTGTGCAACTTTATGCCAAGGAGTGTAGCAGGCTTCTTCTCGAGGTTCTTAAGAGAGGTCCTAGAGTCGAGGCAGACAAGGAGGAGGTTGGATCTGATATCACTAGTGCTCCACGTGAAACCTTTTTCGACATCTCAAAAGGTCGACGGGGGTTTTTTGAGGCAGAGGAAGCTGAAGAACTACTAAAGCCTTTGAAAGAGCCAGGGAATTCTTATACCGCTGAGCCCATTCTTGTATCCCTCAAGAATCAGTTAAAAGAAGTGGACCTCTCTGATTTTATTGCAGGAAGAACAGAGTCAGAAGCTCTAGAAGTCATGAAATTGTTCTCAGATGCTTTAGAAGGCAGCATCTTGAGGTCTCTGAACCTCTCAAACAACGCCTTAGAGCTTTTGGCTCTCATCTTGAGGTCTCTGAACCTCTCAAACAACGCCTTAGGTGAGAAAGGTGTTAGAGCTTTTGGCTCTCTCCTGAAATCACAGACTTGGTTAGAGGAGCTATACTTGATGAATGATGGCATTTCCAAGGAAGCTGCTCAGGCAGTGTCCGAGTTGATTCCTTCAACGGATAAGCTTAGAGTCCTTCAATTTCATAATAACATGACAGGCGATGAAGGTGCTCTTTCCATCGCTGAAATCGTGAAGCGTTCTCCTCTATTGGAAGATTTCCGCTGCTCCTCTTCACGGATAGACTCTGAAGGAAATCATTTCCGCTGCTCCTCTTCACGGATAGACTCTGAAGGGGGAGTTGCCTTATGTATAGCACTCGAAACTTGTACCAACTTGAAGAAACTTGATCTTCAAGACAACATGCTTGGAGTGGAAGGTGGATTTGCTCTGAGTAAGTCCCTTGCATACCATGTAGATCTCAAGGAGTTGTATTTGAGCTACCTGAACTTGGAAGATGAAGGTGCAATTGCCATAGCTAATGCACTAAAGGACACAGCTCCTGCACTAGAAGTCTTGGAAATGGCTGGTAATGACATAACAGCTGAAGCTGCTTCTGTATTAGCTGCTGGAATAGCTAAAAAATCCCATCTTACCAGCTTGAATCTGGCCGAGAGCTGCTTCTCTGCTGGAATAGCTAAAAAATCCCATCTTACCAGCTTGAATCTGGCCGAGAATGAACTGAAGGATGAAGGAACTATCCTGATCAGTAAGGCACTAGGTCACATCAAAATAAAAGAAGTTGATATGAGTACTAACTTAATAAGGCGGGCAGGGGCTCGGGTTTTAGCTCAGACTGTGGTTCAGAAGCCTGGTTTTGTGTTGCTGAACATCAATGGAAATTTCATTTCTGATGAAGGCATTGATGAGACATTTTCAAGAAACATCCGAATATGCTTGGGCCCTTGGATGGAAATGATCCCTGATGAGGTGAAAGACATTTTCAAGAAACATCCGAATATGCTTGGGCCCTTGGATGGAAATGATCCCGAGGGGGTAGATGGGGATGGGGACGAGGACGAGGACGAGGATAAGGATCCCGTAGCAGACGAGAACGATGAGGATGAATTGGGATCAAAACTAAAGAACCTTGAAGTACCAATTAAATTCCCATATAAATGCTTCATGGTGGCCAATGGAGCAAAAGAGACAAATACGTTTGTTACAACGTTTTAG 1869 44.19 MDFENTNLECRPLSIKLWPPSDNTRNMLVERMTSNLTSKSFFTQKYGTLSREEATDESKRIEDIAFATANQNYENQPDGDGSAAVQLYAKECSRLLLEVLKRGPRVEADKEEVGSDITSAPRETFFDISKGRRGFFEAEEAEELLKPLKEPGNSYTAEPILVSLKNQLKEVDLSDFIAGRTESEALEVMKLFSDALEGSILRSLNLSNNALELLALILRSLNLSNNALGEKGVRAFGSLLKSQTWLEELYLMNDGISKEAAQAVSELIPSTDKLRVLQFHNNMTGDEGALSIAEIVKRSPLLEDFRCSSSRIDSEGNHFRCSSSRIDSEGGVALCIALETCTNLKKLDLQDNMLGVEGGFALSKSLAYHVDLKELYLSYLNLEDEGAIAIANALKDTAPALEVLEMAGNDITAEAASVLAAGIAKKSHLTSLNLAESCFSAGIAKKSHLTSLNLAENELKDEGTILISKALGHIKIKEVDMSTNLIRRAGARVLAQTVVQKPGFVLLNINGNFISDEGIDETFSRNIRICLGPWMEMIPDEVKDIFKKHPNMLGPLDGNDPEGVDGDGDEDEDEDKDPVADENDEDELGSKLKNLEVPIKFPYKCFMVANGAKETNTFVTTF 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9154854 9157799 + CmaCh06G014240.1 Cma06g01424 296978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01424 622 MobiDBLite consensus disorder prediction 549 591 - -
Cma06g01424 622 SUPERFAMILY RNI-like 201 522 - -
Cma06g01424 622 Pfam WPP domain 14 109 IPR025265 -
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 217 316 - -
Cma06g01424 622 Gene3D Ribonuclease Inhibitor 442 528 IPR032675 -
Cma06g01424 622 Gene3D Ribonuclease Inhibitor 318 441 IPR032675 -
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 318 437 - -
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 1 211 - -
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 436 521 - -
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 1 211 IPR045203 GO:0005096
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 436 521 IPR045203 GO:0005096
Cma06g01424 622 MobiDBLite consensus disorder prediction 562 584 - -
Cma06g01424 622 Gene3D Ribonuclease Inhibitor 155 317 IPR032675 -
Cma06g01424 622 SMART LRR_RI_2 398 425 - -
Cma06g01424 622 SMART LRR_RI_2 369 396 - -
Cma06g01424 622 SMART LRR_RI_2 341 368 - -
Cma06g01424 622 SMART LRR_RI_2 215 242 - -
Cma06g01424 622 SMART LRR_RI_2 446 473 - -
Cma06g01424 622 SMART LRR_RI_2 243 270 - -
Cma06g01424 622 SMART LRR_RI_2 271 298 - -
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 318 437 IPR045203 GO:0005096
Cma06g01424 622 Gene3D WPP domain 14 112 IPR038214 -
Cma06g01424 622 Pfam Leucine Rich repeat 401 420 IPR001611 GO:0005515
Cma06g01424 622 Pfam Leucine Rich repeat 372 391 IPR001611 GO:0005515
Cma06g01424 622 Pfam Leucine Rich repeat 340 363 IPR001611 GO:0005515
Cma06g01424 622 Pfam Leucine Rich repeat 218 236 IPR001611 GO:0005515
Cma06g01424 622 Pfam Leucine Rich repeat 446 463 IPR001611 GO:0005515
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 540 597 - -
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 217 316 IPR045203 GO:0005096
Cma06g01424 622 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 540 597 IPR045203 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01424 K14319 RANGAP1; Ran GTPase-activating protein 1 - csv:101208192 720.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01424 Cma14g01690 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01424 Cma-Chr6:9154854 Cma08g00308 Cma-Chr8:1757282 0 dispersed
Cma14g01690 Cma-Chr14:12561638 Cma06g01424 Cma-Chr6:9154854 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01424 Cma_Chr06 FPKM 0.236134 0.440223 1.009826 1.006552 8.578402 8.886709 8.75515 0.133501 0.125563 0.0
Cma06g01424 Cma_Chr00 FPKM 0.725265 0.958643 0.669303 0.926332 5.954498 6.302995 6.847332 0.173808 0.129072 0.096908