Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01425 ATGAGGAAAATAAAGCTGACTCTCAATTCATCGAGACTACCTGGCCTCACATCAAATTCTCATCGGAGCCTTCAACCATGTGTAGACTCTCAATTCATCGAGACTACCTGGCCTCACATCAAATTCAAATCTCAAATCCCTCCGCCTTTTGAATTCGCCGCTTTCAAATCCTGTTTTCTCGATCTCGATTCTTCCAAATCCCTAAACCAATGCGACGATGTTAATCACATTCTTTCTAATTACCACAACGCTACTAACTCTCTTCTTCCTCTTCCTCCTTCCGATGCTCCGAAGAAATCCGACGACGTCGTCCGCCGTGAAGCCAAATCTCCAATGGCGACCAAGGAATTAGAATCCGCCTACGTTCATCCGCTCGTCAAGCGCTCTCGTTCTACTCTGAGCGATAAGAGCTTGGCGCTCTGTACTGAAAATTTAGGCAACGAGACTGGAGCGGATTTTCTCGAGGAGGACGCTGTTTTCTCCGATCTGAAAATCGAGCGATCTTCGACGAGGAAGCGAGTGAAATCGGATAATCAAGGTAACAAGAAACTATTTCCACCGCCTCTAACGACAATCGCCGGCGAGGATTCGATTCGAGTACGGTCGTATCGCGAAGACGGAAGGTTGATAATGCAGGCGGTGAAGGCTCCGTCGAGGCTCTCGTATTTCCATGCCGAACGAAGCCAGGGCCGCCTTCGACTGAGCATTTTGAAAAGTAGTACTCCCAAAGCTGACTCCAATGAAGAAAGTACGGAAAAGGAAGTTGAAATTAACACACCAAACGACGACGTTGAAGCGGTGGGCAAGAAAAGTAATTATGAGGAAAATACGAGGAGGAAAGTGGAAGAAAATGGAAATCTCAGAGGGGCGGAAATGGAAATAGAAAAACTTGAGATGATGCCATGCAAGGCCAAACAGGCGGGGGAGAGGAGGAGATCGATTTCAAAACCTAGAGTGACCATTGCGGTATCCGGTTCCATCATCGACAACGCTCGATCCCTCGAGATTGCCACTAGATTGGCTGGTCAAATTGCTCGTGCAGCAACCATATTCCGAATTGACGAGGTAGTGGTATTCGACAGTAGAAGGAGTTCGGTGACTGACTCGGATGTTGCGGCAGCGAACAATTCTGATGATGAGCAAAGTGGCGCTGCTTTTCTTATAAGGAATCACGGATGTTGCGGCAGCGAACAATTCTGA 1200 47.67 MRKIKLTLNSSRLPGLTSNSHRSLQPCVDSQFIETTWPHIKFKSQIPPPFEFAAFKSCFLDLDSSKSLNQCDDVNHILSNYHNATNSLLPLPPSDAPKKSDDVVRREAKSPMATKELESAYVHPLVKRSRSTLSDKSLALCTENLGNETGADFLEEDAVFSDLKIERSSTRKRVKSDNQGNKKLFPPPLTTIAGEDSIRVRSYREDGRLIMQAVKAPSRLSYFHAERSQGRLRLSILKSSTPKADSNEESTEKEVEINTPNDDVEAVGKKSNYEENTRRKVEENGNLRGAEMEIEKLEMMPCKAKQAGERRRSISKPRVTIAVSGSIIDNARSLEIATRLAGQIARAATIFRIDEVVVFDSRRSSVTDSDVAAANNSDDEQSGAAFLIRNHGCCGSEQF 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9159640 9168340 - CmaCh06G014250.1 Cma06g01425 296979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01425 399 Pfam Fantastic Four meristem regulator 185 235 IPR046431 -
Cma06g01425 399 Coils Coil 280 300 - -
Cma06g01425 399 MobiDBLite consensus disorder prediction 245 260 - -
Cma06g01425 399 MobiDBLite consensus disorder prediction 267 282 - -
Cma06g01425 399 CDD HsC9orf114-like 319 390 IPR003750 -
Cma06g01425 399 PANTHER FANTASTIC FOUR-LIKE PROTEIN (DUF3049) 22 305 IPR021410 -
Cma06g01425 399 Gene3D - 309 391 IPR029026 -
Cma06g01425 399 Pfam Putative RNA methyltransferase 319 387 IPR003750 -
Cma06g01425 399 PANTHER PROTEIN FANTASTIC FOUR 3 22 305 - -
Cma06g01425 399 MobiDBLite consensus disorder prediction 238 282 - -
Cma06g01425 399 SUPERFAMILY alpha/beta knot 318 362 IPR029028 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01425 - - - csv:105435086 353.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01425 Cma14g01689 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01303 Cma-Chr2:7672436 Cma06g01425 Cma-Chr6:9159640 3.93E-16 dispersed
Cma06g01425 Cma-Chr6:9159640 Cma19g00045 Cma-Chr19:237498 2.14E-32 dispersed
Cma20g00161 Cma-Chr20:792131 Cma06g01425 Cma-Chr6:9159640 4.64E-14 dispersed
Cma14g01689 Cma-Chr14:12556473 Cma06g01425 Cma-Chr6:9159640 2.78E-35 transposed
Cma14g01688 Cma-Chr14:12552548 Cma06g01425 Cma-Chr6:9159640 5.21E-124 wgd
Cma17g00257 Cma-Chr17:1330175 Cma06g01425 Cma-Chr6:9159640 6.62E-32 wgd
Cma17g01171 Cma-Chr17:8143524 Cma06g01425 Cma-Chr6:9159640 5.05E-19 wgd
Cma06g01425 Cma-Chr6:9159640 Cma08g01162 Cma-Chr8:7157637 4.38E-32 wgd
Cma06g01425 Cma-Chr6:9159640 Cma08g00353 Cma-Chr8:2019592 9.80E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g459 . . . . . . . . . . Cma06g01425 Cma14g01689 Car06g01228 Car14g01522 Sed12g0906 . Cpe03g01423 Bhi01g00838 Tan10g0866 Cmetu06g1993 . Hepe05g1534 . Lcy11g1521 . . . . . . . . . . . Lsi05g01440 . . Cme06g00628 . Blo07g00211 Bda11g00567 . . Bpe13g00617 . Bma06g01546 . Cmo06g01428 Cmo14g01733 . . . . . . . . . . . . . Cla05g00564 Cam05g0620 Cec05g0630 Cco05g0625 Clacu05g0616 Cmu05g0584 Cre05g0652 . Csa03g01353 Chy06g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010240 1 0 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01425 Cma_Chr06 FPKM 10.90027 12.333399 4.965135 4.317492 6.430875 5.285831 6.688356 0.90229 1.060014 0.942896
Cma06g01425 Cma_Chr00 FPKM 12.280187 14.422147 5.224996 4.341035 6.696821 5.609293 7.107612 0.597119 0.757614 0.708585