Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01426 ATGCATCAGCGCCCTTCAGTTACGTCCGATATCCCGCACTTGGCGATCGACAAGTTTCTCTCTATCGTTGTCCATACATGCAGTGCCCCGCCACTCGCAGAAGCAAGACGGCGGTTGCTTCACCACCGGCGCCGGGAACTCTCCATTACGACCCGACTCCCCATTTCTCTTACGCCCTCATCTTCTTCATCTCCTCTTTCCTCCTTAATAACCCATCCTGTATTGCGTAGGCGCGGCATTCCATTTCCAATGGCCGCAACGCTTCTTCCGTCTACCAAAATTCCTCCCCCTCGGCTGCCCGTCTCATCTGAACGCCGCCATCCAGTTTATTTACCAAAACTTATCAATAGCAATGGACCCATATGCTCCACCCCCAAATTTAGGCCTTCGAAAGCATTTATGAGCTCATCTTCTTCAAACAATGCCGTCGATTCTAATTTCGAGGCTTCCACTCTCCGCGAGATCTGTAATGGATATGTTCCCGATCATATATTGGACAGAGCTGAGGAAATTGGATTTGTTGCCCCAACTGGTGTGCAGAGGCAAGCTCTTCCAGTTCTGTTTTCTGGTCAGGATTGCGTGCTTCATGCGCAGACAGGTTCTGGGAAGACGCTGACATATTTGCTATTGATATTTTCTGTAATCAACGCTCAGAAATCAGCTGTGCAAGCACTGATTGTAGTCCCCACCCGGGAGCTTGGAATTCAGGTTACTAAAGTTGCTAGGATGTTAGCTGCAAAGCCTGCAACGGCGGATGAAGTTGGGCAGAAATCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACTTGGTTGAAGGCAGATCCCTCTTCTATACTGGTGGCAACAGTAGGAAGCTTGTGTCAAATGGTTGAGAGGCGATTTCTTGATCTTGCCTCACTAAAGGTGCTGGTAATTGACGAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCTCTGAAGAAAATCTTGACATCATATTCTATGTTCAGTAATCGTCAGACTGTTTTTGCAAGTGCATCAATTCCCCAGCATAGGCATTTTCTTCAGGAATGTATACAGCAGAAGTGGACAAAGAATAATGTAATCCATATTCATATTAACGCAGTTCAGCCCATGCCATCGTGTCTACTCCATAGATTTGTGATATGTGACAAGAACAAAAAACACCAAACCTTCCTGAGTGTACTACTAACAGATAAACCTCAGTCTGCAATCATTTTTGTCAGTGAGCAGTCAGAGAGGTCAAAGAAGGCTGGAAAGATTCCACCAGCAACCTTGATGATTGATTTCTTAAAGACTTCATATGATGGTTGTTCTGATGTCGTCCTTCTCGACGAAGACGTAAATTTCAATTCACGAGCATCTTCCCTATCGGAAGTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACTTAGTGGCCAGGGGAATCGACTTACCCGAAACGACTCATATATACAACTTTGATCTACCTCGAAGACTTAGTGGCCAGGGGAATCGACTTACCCGAAACGACTCATATATACAACTTTGA 1560 45.26 MHQRPSVTSDIPHLAIDKFLSIVVHTCSAPPLAEARRRLLHHRRRELSITTRLPISLTPSSSSSPLSSLITHPVLRRRGIPFPMAATLLPSTKIPPPRLPVSSERRHPVYLPKLINSNGPICSTPKFRPSKAFMSSSSSNNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGQDCVLHAQTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQKSYVVMALLDGGLLRRHKTWLKADPSSILVATVGSLCQMVERRFLDLASLKVLVIDEVDFMFSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHIHINAVQPMPSCLLHRFVICDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMIDFLKTSYDGCSDVVLLDEDVNFNSRASSLSEVRQGGSYLIVATDLVARGIDLPETTHIYNFDLPRRLSGQGNRLTRNDSYIQL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9173121 9178585 - CmaCh06G014260.1 Cma06g01426 296980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01426 519 CDD DEADc 164 373 - -
Cma06g01426 519 Pfam Helicase conserved C-terminal domain 398 518 IPR001650 -
Cma06g01426 519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 367 IPR014001 -
Cma06g01426 519 Pfam DEAD/DEAH box helicase 178 351 IPR011545 GO:0003676|GO:0005524
Cma06g01426 519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 519 IPR001650 -
Cma06g01426 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 353 IPR027417 -
Cma06g01426 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 304 503 IPR027417 -
Cma06g01426 519 SMART ultradead3 172 388 IPR014001 -
Cma06g01426 519 Gene3D - 382 519 IPR027417 -
Cma06g01426 519 Gene3D - 124 370 IPR027417 -
Cma06g01426 519 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 129 501 - -
Cma06g01426 519 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 129 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01426 - - - cpep:111799935 890.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01426 Cma-Chr6:9173121 Cma06g00363 Cma-Chr6:1678446 5.70E-26 dispersed
Cma06g01426 Cma-Chr6:9173121 Cma14g01266 Cma-Chr14:10033868 1.21E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g450 . . . . . Bpe14g01313 . . . . Cma06g01426 . Car06g01230 . . . . . . . . . . . . . . . . . . . . Cone7ag0225 . . . . . . . . . . . Bma02g00688 . . Cmo06g01430 . . . . . . . . . . . . . . . . . . . . . . Csa03g01356 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005533 1 5 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01426 Cma_Chr06 FPKM 5.058333 4.425186 1.699835 1.957963 9.775975 10.338341 11.25454 1.413953 1.437356 1.287679
Cma06g01426 Cma_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0