Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01432 ATGGCTCATATTGCTGTGGAGAGGAATAGGAGAAGGCAGATGAATGAACATCTTAGGGTTTTGAGAACTTTGACACCTTGTTTCTATATCAAAAGGGGAGATCAAGCGTCGATAATTGGGGGAGTGATCGAGTTCATTAAGGAGTTGCATCAGGTTTTGCAATCGTTGGAGTCGAACAAACGGAGGAGGAAGAGTGTAAGTCCGAGCCCGAGTCCGAGGCCGTTGGTGGCGGTTGCCGATGGATTTGAAAATGGAGTTGATGTCGGAGCTTGTTGTAACTCATCGGTGGCGGATGTCGAAGCGAAGATTTCAGGTTCGAACGTGCTGTTGAAGATCATTTCTCGACGAATTCCTGGGCAACTTTCGAAGATGATTAGTGTGTTGGAGAGGCTGTCGTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTTTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGATGAATTAGCCTTTGAAGTTCAACAAAGCTTCTGCTCTCAAGTTTACTTATGCCAGTGA 549 44.81 MAHIAVERNRRRQMNEHLRVLRTLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSVSPSPSPRPLVAVADGFENGVDVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLDELAFEVQQSFCSQVYLCQ 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9199180 9200670 + CmaCh06G014320.1 Cma06g01432 296986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01432 182 PANTHER TRANSCRIPTION FACTOR MUTE 1 179 - -
Cma06g01432 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Cma06g01432 182 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Cma06g01432 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 64 IPR036638 GO:0046983
Cma06g01432 182 Gene3D - 1 65 IPR036638 GO:0046983
Cma06g01432 182 PANTHER TRANSCRIPTION FACTOR FAMA 1 179 IPR044283 GO:0003700|GO:0010052
Cma06g01432 182 SMART finulus 4 55 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01432 Cma-Chr6:9199180 Cma14g01891 Cma-Chr14:13384125 6.62E-51 dispersed
Cma18g01299 Cma-Chr18:10009273 Cma06g01432 Cma-Chr6:9199180 1.07E-27 dispersed
Cma06g01432 Cma-Chr6:9199180 Cma12g00225 Cma-Chr12:1104808 3.38E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35271 PF00010 HLH 8.20E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01432 - - csv:101203445 304.679