Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01433 ATGAGTAAAGAAGAGTTTCTGAAGATCCAGAAATGTGTGTTGAAGGTCAATATTCACTGCGATGGATGTAAGCAAAAGGTGAAGAAAATCTTGCAGAAAATCGATGGGGTTTTCACTACCGAGATAGATGCAGAACAGGGGAAGGTTACAGTCACTGGAAATGTCGACGCCGCCGTACTCATCAAGAAGCTGTCTAAATCCGGCAAACATGCAGAGATTTGGGGCGGGCAACCGGCGAACAACAACAAGAATCAGCAGAACAACATAGCTAATCAGATGAAAAACATGCAAATTGACAATGCCAAAGGGGGGAACAACAAGGGTCAGAACCAGAAGGGTGCGGCTGCTAATGGAGGAAACAACCAGCCGAAAGGCGGCGGACAGGGACAGGGGCTGCCACCGGTGCAGCTTCAGCAGCTACAACAGATGAAAGGGTTTCAAGATCTGAAGCTTCCACCCCAATTTAAGGGGTTGAAACTGCCTGTTAAAGATCAAAACGCGAATCTTCCCAAGGGTGGGAAGTTTAATTTGCACGAAGGTGATGACCTGAGCGATGAGAATGATGAGGATGATTATGACGATGAGGATGATTATGATGATGATGATGAACTTGATGATGATTTGGGTAATCTTCATCTTCCTCCTGCGAGTAAGATGAAACCCATGATGGGAAATGGCCAGATTCCGAAAATGATGATGAATGGAAACCTTCCCCCGGTTGTGAATGGTCCGGCCGGCGGTGGTAATGCCAAGAAAGGCGGCGGAGCTGTGCCGGTTCAGGGTAATAACAATGGGAAGAATGTTACCGGCGGAGGAGGTAAAGGAAATGGTGGCGGCGGCGGTGGAGGTGGGAGTAACCAAAAGCAGGGCGGTGGAGGTGGGAGTAACCAAAAGCAGGGCGGCGGCTGCGGCGGCGGTGTGAGCAATGGCAAAAACGGCAACGGCGGTGGAAATGGTAGTAGTAACGGGGTGAACGGCGGTCAAAAGATGACCGGTGGGTCAAATGGAATGGGCCATGATTTACAGAGCTTCATCGGTGCTCATGGATTGGGAATGTCAAATTTGGGTCAAATGGGTGACCGGCCGATGGGTCAAATGAACAATCTTCCAGCGGTGCAAGGTCTTCCCGCATCAGCGGCGGCAGCCATGAACGGTGGAGGCAGCGCCGGGAGGTTTATACCGGACAGCATTTCCACAAACCCCTACCACCACCACCACCAGCAACAGCAACAGCAACAGCAACAACACATGGCCCAAATGATGAACCAACAACAACACGCGCTTGGGCACCAACCAATGATGTACGCACGGCCACCGCCGGCCGTAAATTACGTGCCACCGCCGTACCCATACCCATATCCATACCCACCACCGTACCACCACCCATATCCACCGCCGCAGCAGCCAGAACCCTACACGTATTTCAGCGACGAGAATCCGTCAAGTTGTAACATCATGTGA 1461 51.33 MSKEEFLKIQKCVLKVNIHCDGCKQKVKKILQKIDGVFTTEIDAEQGKVTVTGNVDAAVLIKKLSKSGKHAEIWGGQPANNNKNQQNNIANQMKNMQIDNAKGGNNKGQNQKGAAANGGNNQPKGGGQGQGLPPVQLQQLQQMKGFQDLKLPPQFKGLKLPVKDQNANLPKGGKFNLHEGDDLSDENDEDDYDDEDDYDDDDELDDDLGNLHLPPASKMKPMMGNGQIPKMMMNGNLPPVVNGPAGGGNAKKGGGAVPVQGNNNGKNVTGGGGKGNGGGGGGGGSNQKQGGGGGSNQKQGGGCGGGVSNGKNGNGGGNGSSNGVNGGQKMTGGSNGMGHDLQSFIGAHGLGMSNLGQMGDRPMGQMNNLPAVQGLPASAAAAMNGGGSAGRFIPDSISTNPYHHHHQQQQQQQQQHMAQMMNQQQHALGHQPMMYARPPPAVNYVPPPYPYPYPYPPPYHHPYPPPQQPEPYTYFSDENPSSCNIM 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9207153 9208802 - CmaCh06G014330.1 Cma06g01433 296987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01433 486 MobiDBLite consensus disorder prediction 239 340 - -
Cma06g01433 486 Pfam Heavy-metal-associated domain 14 70 IPR006121 GO:0046872
Cma06g01433 486 SUPERFAMILY HMA, heavy metal-associated domain 10 75 IPR036163 GO:0046872
Cma06g01433 486 MobiDBLite consensus disorder prediction 311 338 - -
Cma06g01433 486 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 1 486 - -
Cma06g01433 486 MobiDBLite consensus disorder prediction 98 133 - -
Cma06g01433 486 MobiDBLite consensus disorder prediction 399 426 - -
Cma06g01433 486 ProSiteProfiles Heavy-metal-associated domain profile. 17 73 IPR006121 GO:0046872
Cma06g01433 486 MobiDBLite consensus disorder prediction 462 486 - -
Cma06g01433 486 MobiDBLite consensus disorder prediction 163 226 - -
Cma06g01433 486 MobiDBLite consensus disorder prediction 400 426 - -
Cma06g01433 486 MobiDBLite consensus disorder prediction 182 207 - -
Cma06g01433 486 MobiDBLite consensus disorder prediction 472 486 - -
Cma06g01433 486 Gene3D - 9 81 - -
Cma06g01433 486 PANTHER HEAVY METAL TRANSPORT/DETOXIFICATION DOMAIN PROTEIN 1 486 - -
Cma06g01433 486 CDD HMA 13 72 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01433 - - - csv:101203695 281.952
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01433 Cma08g01168 CCT
Cma06g01433 Cma17g00269 CCT
Cma06g01433 Cma08g01168 ECH
Cma06g01433 Cma17g00269 ECH
Cma06g01433 Cma14g01677 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00350 Cma-Chr1:1736297 Cma06g01433 Cma-Chr6:9207153 2.05E-21 dispersed
Cma06g01433 Cma-Chr6:9207153 Cma10g01072 Cma-Chr10:6844435 2.11E-34 dispersed
Cma14g01677 Cma-Chr14:12509207 Cma06g01433 Cma-Chr6:9207153 2.69E-96 wgd
Cma17g00269 Cma-Chr17:1398181 Cma06g01433 Cma-Chr6:9207153 1.88E-44 wgd
Cma06g01433 Cma-Chr6:9207153 Cma08g01168 Cma-Chr8:7193948 8.67E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g432 . . . Bda08g00392 . Bpe14g01320 . Bma05g00945 Cmo08g01141 Cmo17g00256 Cma06g01433 Cma14g01677 Car06g01235 Car14g01511 Sed02g1273 . . Bhi01g00858 Tan10g0886 Cmetu11g1818 Lac12g2329 Hepe05g1523 . Lcy11g1507 Cla06g00546 Cam06g0589 Cec06g0586 Cco06g0594 Clacu06g0576 Cmu06g0570 Cre06g1336 Cone14ag0822 . Cone7ag0216 Cone4ag0208 Lsi05g01455 . Chy11g01430 Cme06g00645 . . Bda11g00561 . . Bpe13g00622 . Bma06g01540 . Cmo06g01436 Cmo14g01722 Cma08g01168 Cma17g00269 Car08g01046 Car17g00244 . . Bhi12g01804 . . . . . . Cla05g00578 Cam05g0634 Cec05g0644 Cco05g0639 Clacu05g0630 Cmu05g0598 Cre05g0666 Lsi09g01356 Csa03g01371 Chy06g00615 Cme11g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000577 6 3 3 5 3 3 6 3 3 3 3 2 6 3 3 6 2 4 1 3 4 3 3 3 3 3 4 5 3 3 105
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01433 Cma_Chr06 FPKM 18.972279 18.745703 7.777029 8.551877 40.573521 41.134377 40.456398 0.348954 0.198437 0.261844
Cma06g01433 Cma_Chr00 FPKM 18.194265 18.167154 7.637378 8.57581 44.67812 45.058849 42.760654 0.364869 0.227498 0.241016