Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g01434 | ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCTCCGCCGTACCATTCTTCTTCCTCCTTCTATTACCCTTCTGAACCCACATCCCTTCCACCGCCGCCGCAGACCCATCACTTCACCAATTCCCACCCTCCTCCGCCGCACAGCCACCCTTACACTCCAACTCCCCAGCCGATACCCTTGCCGCCGATTCCTCCTGCCCCTGCTCCTCACTCCTATTACTTTTCTGGTGGGTACAATTCGTGTAATTATGGGAACTCTCCGATGGGGCGTTTCAATTTCCACCCTCATTATGCCAATCAGAGTAATGGGTGGTCTCCAATTCGGCCGGTGATGGTGCCGCCGTTGCTTCCGCCACCGTCTTTGCCGTTTGTGGAGCATCGACAGGCGAAGAAGGTTAGGAATGATGTGAATGTGCATAAGGATACTTTGAGGATTGAGGTGGATGAGCAGATTCCTGATCAGCATTTGGTTTCTTTCGTGTTTGATGCGTTGTATGATGGAAGCATTACCATCCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGGTTTGTTCCAATATATCCCGACGCCTTTAAGCCAGTAAAAATCCCATTTCAAAAGGGTCCTGCTCAGAAATTCTTTCAGCCTATGGGAACTGGCTTTGACTTGGGATTTTTCGAGTTGGATGACCTCTCAAAACCTTCGCCTTCTGAAGACGTTTTCCCGCTCGTTATAGCAGCTGAGACTTGCTCACCCTCTCAGTCCAAGGATGAACGAATTGGTGAGCCTCAACCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGCAATCCTTTCCAAGTTAAGGTGATCCGGCAACTACTATGGATTGATGGAATGCGTTATGAGTTGCGTGAGATATTCGGTATAGGGAGTTCGTCTTCAGAAGGTTTTGACAATAACGACTCCGGGAAGGAGTGTGTGATTTGCATGACCGAACCCAAGGATACTGCTGTATTACCATGCCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAAGCTTCAATCTAATAAATGTCCGATTTGTCGTCAACCGATCGAAGAGCTTATAGAAATCAAGATAAATAATAGCAATCACTCAGCTCAGCTCAGCTCAGCTCAGATTTTCGAAATCTCCGCAAGTACAATGCAGCAACCAATGGAGAAGAGAAGGGCTAATAAAAAAAGAAAACGGAGTTCCAAAATAAAAGAGTACTCTGCCTCTCCGTTTTGGTGTTTTCCCCTTCGTTTCTCAGCTCTTCTCTGCCCCCATTTATCCCATCTCCGTTTCTCTCTGAACTTCGCTCTTCTCTGTTGGGTTTCTTCTTTTTTTCCCTCTCCCTTCTCAAGATTCTTACTTTCTCTGCATTTTCTTGGTTGA | 1425 | 46.11 | MGISWSNRRRNNYLQNPPPPYHSSSSFYYPSEPTSLPPPPQTHHFTNSHPPPPHSHPYTPTPQPIPLPPIPPAPAPHSYYFSGGYNSCNYGNSPMGRFNFHPHYANQSNGWSPIRPVMVPPLLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQIPDQHLVSFVFDALYDGSITILFFAKEEPNCRFVPIYPDAFKPVKIPFQKGPAQKFFQPMGTGFDLGFFELDDLSKPSPSEDVFPLVIAAETCSPSQSKDERIGEPQPDNSHMQITQAVLEKKNGNPFQVKVIRQLLWIDGMRYELREIFGIGSSSSEGFDNNDSGKECVICMTEPKDTAVLPCRHMCMCSECAKELKLQSNKCPICRQPIEELIEIKINNSNHSAQLSSAQIFEISASTMQQPMEKRRANKKRKRSSKIKEYSASPFWCFPLRFSALLCPHLSHLRFSLNFALLCWVSSFFPSPFSRFLLSLHFLG | 474 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9208912 | 9214144 | - | CmaCh06G014340.1 | Cma06g01434 | 296988 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g01434 | 474 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 380 | - | - | |
| Cma06g01434 | 474 | PANTHER | MAHOGUNIN | 1 | 380 | IPR045194 | GO:0061630 | |
| Cma06g01434 | 474 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 312 | 387 | IPR013083 | - | |
| Cma06g01434 | 474 | MobiDBLite | consensus disorder prediction | 32 | 69 | - | - | |
| Cma06g01434 | 474 | SMART | ring_2 | 326 | 364 | IPR001841 | - | |
| Cma06g01434 | 474 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 325 | 365 | IPR045195 | - | |
| Cma06g01434 | 474 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Cma06g01434 | 474 | SUPERFAMILY | RING/U-box | 325 | 371 | - | - | |
| Cma06g01434 | 474 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Cma06g01434 | 474 | ProSiteProfiles | Zinc finger RING-type profile. | 326 | 365 | IPR001841 | - | |
| Cma06g01434 | 474 | Pfam | Zinc finger, C3HC4 type (RING finger) | 324 | 370 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g01434 | Cma14g01676 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00374 | Cma-Chr6:1731335 | Cma06g01434 | Cma-Chr6:9208912 | 3.22E-92 | dispersed | |
| Cma06g01434 | Cma-Chr6:9208912 | Cma14g00207 | Cma-Chr14:889938 | 1.56E-94 | dispersed | |
| Cma16g01147 | Cma-Chr16:8819354 | Cma06g01434 | Cma-Chr6:9208912 | 2.82E-06 | dispersed | |
| Cma19g01047 | Cma-Chr19:8850550 | Cma06g01434 | Cma-Chr6:9208912 | 5.58E-06 | dispersed | |
| Cma14g01676 | Cma-Chr14:12503100 | Cma06g01434 | Cma-Chr6:9208912 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g01434 | - | - | csv:101203938 | 623.624 |