Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01446 ATGGATCTGTTTTCGGTCTTCTCTGCCGACGGAGCTTCGGAACTGTCCGATGCGGAGGAGGAACATGACGACAACGACCACGACGATGATACGGTTTCTAATATCTCCAATACGAGTTCTGCTTGGAGCTTCGGCGGCCTGATCAAGACTCTCGCGACCACGTCGGAATCTGTAATTTCGAACTACCGCCGTGAGATTGAGGAATTAGGATCCGGATTGAAGAAGGAGACATCGGTGATTCGAGACGTCGCATCGCGTGCCGTGAAGGACCTTCCGACGACGCTCGATGTCGGTGCGTCCGTTGCGCAGGAGTCGCTGGAGTCGGTCGGCCAAGCCATTGACGATATCGGTAGTGCCGTTTGGAAATCGACTTCGAAGATTATCTCACATGGTAGGGATACGTTATTAGCATCTGATCTTGTTTCGGGAAATCATGAAAATAATAGCGATGTTGTTCTTTCGTCAAACCAATTAGGAAGTAGCAATAGTAGAAATCTCGAATTCAAACAGTATAATAGGTTCAATACGCAATTGATTGCGATTCAACGAGACCTGGATACGTATTTGGAGGAACCTAAGGATTTAGAGGATTACAAAAATTGGAAATTAGGTTTTGTATTGGAAGATAAAGAACAGGAAATCGATAATTTGATGAAAGAAAGCGAGGATGTTCGGGAGATTTATCGGACGATAGTTCCAAGTACAATCGTCCGTGAGGTCTTCTGGAGTAGATATTTTTACAGGCTTCACAAGCTTAAGCAAGCAGAAGAAGCCAGAGTTAAGCTCGTGAGGAGAGCCATTTCTGCAGAAGATGAGGAAGATTTGAGTTGGGATGTTGACGATGATGATGATGAAGAAGAAGGGAACAATGCTGAGTTGCAGTCAAAGGGTGAATCCAGTGGCGCTCTCAGTACTGAGAAGAGAGAAAGTGACAGTTCAGAGAGTGCCATCTCTAAGAAAATTGCTGTTTCTAATGATGCAACAGAGGATAGTGATAGGAAGCTGGAAGAGAAAGTTGGTGAAAAATTGGCTGCAGATGGAAGAGGAGACAGTGGTGATTCCTGCAAAGACAGCGACATTTCGATCATTTCCAGTGGGTCTTCCGGGGAAGAAGAACTTGGATGGGATGAAATTGAAGACATTGGAACCATTGATGAAGCCAAGAACAATACCTCTAGTAGTGGCAGTGCACAAAAGATTGGTTTGATCAAGCGGCTGATTGTGGCAGAGGAAGAGGAGGATCTGAGTTGGGAAATTGAGGATGAAGATGAATGTGCTAAATCATGA 1287 45.07 MDLFSVFSADGASELSDAEEEHDDNDHDDDTVSNISNTSSAWSFGGLIKTLATTSESVISNYRREIEELGSGLKKETSVIRDVASRAVKDLPTTLDVGASVAQESLESVGQAIDDIGSAVWKSTSKIISHGRDTLLASDLVSGNHENNSDVVLSSNQLGSSNSRNLEFKQYNRFNTQLIAIQRDLDTYLEEPKDLEDYKNWKLGFVLEDKEQEIDNLMKESEDVREIYRTIVPSTIVREVFWSRYFYRLHKLKQAEEARVKLVRRAISAEDEEDLSWDVDDDDDEEEGNNAELQSKGESSGALSTEKRESDSSESAISKKIAVSNDATEDSDRKLEEKVGEKLAADGRGDSGDSCKDSDISIISSGSSGEEELGWDEIEDIGTIDEAKNNTSSSGSAQKIGLIKRLIVAEEEEDLSWEIEDEDECAKS 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9266037 9267323 - CmaCh06G014460.1 Cma06g01446 297000

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01446 428 MobiDBLite consensus disorder prediction 273 375 - -
Cma06g01446 428 Pfam BSD domain 201 257 IPR005607 -
Cma06g01446 428 MobiDBLite consensus disorder prediction 273 289 - -
Cma06g01446 428 SMART wurzfinal6 201 253 IPR005607 -
Cma06g01446 428 PANTHER PROTEIN, PUTATIVE-RELATED 1 422 - -
Cma06g01446 428 Coils Coil 207 227 - -
Cma06g01446 428 MobiDBLite consensus disorder prediction 325 355 - -
Cma06g01446 428 Gene3D BSD domain 161 263 IPR035925 -
Cma06g01446 428 Coils Coil 252 272 - -
Cma06g01446 428 SUPERFAMILY BSD domain-like 171 259 IPR035925 -
Cma06g01446 428 ProSiteProfiles BSD domain profile. 201 253 IPR005607 -
Cma06g01446 428 PANTHER SYNAPSE-ASSOCIATED PROTEIN 1 422 - -
Cma06g01446 428 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01446 - - - cmax:111472243 721.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01446 Cma14g01667 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01667 Cma-Chr14:12464497 Cma06g01446 Cma-Chr6:9266037 7.40E-165 wgd
Cma17g01155 Cma-Chr17:8025816 Cma06g01446 Cma-Chr6:9266037 1.65E-72 wgd
Cma06g01446 Cma-Chr6:9266037 Cma08g00366 Cma-Chr8:2110748 2.61E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g407 . . . . . . . . . . Cma06g01446 Cma14g01667 Car06g01248 Car14g01501 Sed02g1283 Cpe08g00229 Cpe03g01407 Bhi01g00879 Tan10g0910 Cmetu01g2218 . Hepe05g1507 . . . . . . . . . . . Cone7ag0200 Cone4ag0193 Lsi05g01470 . . Cme06g00662 . . Bda11g00552 . . Bpe13g00632 . Bma06g01531 . Cmo06g01448 Cmo14g01712 . . . . . . . . . . . . . Cla05g00591 Cam05g0650 Cec05g0658 Cco05g0654 Clacu05g0643 Cmu05g0612 Cre05g0680 . Csa03g01387 Chy06g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009552 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 0 1 1 1 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01446 Cma_Chr06 FPKM 10.369076 12.219193 8.374904 8.801111 3.67771 4.455286 3.671416 14.907197 16.261185 14.823056