Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01447 ATGGCATCAATGGTCGCTAAGCCGAGTTGTCCTGCTACTAGCAACCATGGGCCTTCTTCAGTGCTTGTCCAGGAAAAAGGAAGTAGGAATAAGAGGAAATACCGAGCAGATCCACCTTTAGGGGACCTGAATAAGATCACATCTTCATCTCAAGATGAATGTCCGAGTTATGATTTTTCAGCTGAGAAATTTGAGATTAGTTCAAGTCTGGGGCAAATCGGTGCGTGTGACCTGTGTAGCATTAGTCAAGAATTTTCTGCTGGATTGAAACTCGATCTCGGATTGTCCAATGGAGGCTCTCCTGACATTGGGATAGACTGGCCAAGAGGGGAACTGGAAGTTGATGAGTTCCAAGATGTTGATTGGAGTGACCTTACAGAAGCTCAGCTGGTAGAACTAATTTTATGCAATTTAGACACAATATTCAAGGCTGCAATCAAGAAAGTTGTTGCTTCTGGATTCACTGAAGAGGTTGCTATAAAAGCCGTCTCAAGGTCTGGCATTTGTTTTGGTTGTAAAGATATCATGTCGAATGTAGTGGACAATACCTTAGCTTTCCTTAGAAGTGGCCAAGAAATTGATCAATCTAGGGAACACTATTTTGAGGATTTACAGCAACTAGAAAAATATATTTTAGCTGAATTAGTTTGTGTTCTACGAGAGGTTAGGCCTTACTTCAGCACTGGCGATGCAATGTGGTGCTTATTGGTCAGTGACATGAGTGTATCTCATGCATGTACAATGGATAGTGACCCGTCTAACGCAGTTGTCTGCGATGGGAGTTCGAATGAGGGTTCAACTAACTCTACCCCACAGTTAGAAGCAGAAGCCAAAAGCTCTGAGTTGAATTTTCCTAAGCCTCTTAAGCCAATTTCTCCAATCAGCTGTGCTCATAGTTCTCAATCCGATGGACCAGCCACTCTAGGAGCTCCTAATCTTACTAAACCAAAGGACCCATTATTTACTAGTGTATCAGTATCAGATAAAGAACTGCAAAATTCTACCTCTGATGTTGCTAGGGAATCATTTAATGTGGGTGGAAACCCTCAAACTTCCGTGTCTGAAGAAAAAATTGGGAGCAGCAGAAGGGTTCATTCTAATATAATGAAGAGAGAATACATGCTACGACAAAAGTCGCTTCATGTGGATAAAAACTTTCGAACATATGGACAGAAAGGCCCATCAAGAGCTGGAAAGGTGACTGGTTTGGGGAGTTTGATGTTGGATAAGAAACTAAAGTCTGTTTCAGGCTCCACTGCAGTAAACTTTAAGAATGCTTCGCTGAAAATAAGCAAGGCTATGGGAATTGATGTGGCCCAAGACAATGGAAACCATAATCCTACCACCATCGACATTCCTTCTTCCTCTCTATCATTTAACTTGGAAAACAATAAAACCGTTTCTCCTTTTTCTAAGATCAATGTACTATCTTCAATGCCTGCACCTAGTTCACCACTTGCATTACCAGCTACTAATACTTCTTCTGCGCTACCAGCAGCTGAAACTGATCTTTCTCTTTCTTTGCCCACTAAAAGCAATGAGCCCTCGGTGCCTATCAGCTGCAATGCTGAGCCTTCTACTAGTAGTTTTGTTGAGAAGCCTTATGAAAAGTCCCTTGGGCAGTGGTTTCCTAAGGATAAGAAGGATGAGATGGTTTTGAAATTAGTACCAAGAGCTCGGGAATTACAAAGTCAGTTGCAAGAGTGGATGGAGTGGGCCAATCAAAAGGTCATGCAGGCTGCAAGGAGGCTAAGTAAGGACAAGGCTGAACTAAAGACTTTGAAACAAGAAAAGGAGGAAGTTGAACGGCTGAAAAAGGAGAAACAGACTTTGGAGGAAAATACCAAGAAGAAGCTTTCCGAGATGGAACATGCATTGTGCAAGGCTAGTGGGCAGGTTGAACTTGCTAACTCTGCTGTTAGAAGGCTTGAGGTGGAGAATGCTGCTCTACGACAGGAGATGGAGGTTGCAAAATTACGGGCTACAGAATCAGCAGCTACCTATCAGGAGGTTTCTAAGAGGGAAAAGAAAACACTAGTGAACGTTCAATCATGGGAGAAGACGAAAATGTTGTTTCAGGAAGAACACACAGTCGAAAAACGAAAATTAAAACAACTAATACAGGAACTTGAGCAGGCGAGGGATGTCCAGGAACAACTGGAGGGTAGAGGGAAAATGGAGGCGAGAGCAAAAGATGAGCTGCTCATGCAGGCTGCTTCATTGAGAAAGGAGAGAGAACAAATTGAAGCTTCATTGAAAGCAAAGGAGGATACAATAAAATTGAAAGCAGAAAACAATCTTTTAAAGTACAAAAGCGATATCCAAAAGCTTGAAAAAGAAATATCTCAGTTGAGACTTAAGACAGATTCTTCCAGAATTGCTGCTCTTAAAAGGGGCATCGACGGAAGTTATGCCAGTAGGCTTATAGATACCAGAAACAGCACAGATCACAACGAGTCCTGGACCCCGAATGTCTCGGAATCGATGAAGGATCTTTACGAGTACTCTGGAACTGGGAGTGTGAAGCGGGAACGGGAGTGTGTAATGTGTCTTTCGGAGGAGATGTCAGTAGTGTTTCTTCCATGCGCCCATCAGGTGGTGTGCACAACCTGCAATGAACTACATGAAAAACAAGTGGGAACAGCCGTGAAACGACACCGTATTGAAAAGAATTCATCAGACGCCAGGGCCAGGCCGAACTGTGAACCGGTCCTTCTTCTTCGATCCGCCGCCAGAATTGAGTTGCAGGCTCTGTCAAAACCCTCAATCCGTAAACCCCATCACTTTCTCTTCAATCATTTCATCGCCATTGAATTCGGAATGGGGTTCGAAAGCTACGTCGTCGTACATAACATAGCCAAAAGGCACAACGTTGGCACATTGGCCCGAAGCGCCACCGCGTTCGGTGTATCGGAGGTCATCCTCGTCGGCCGTCGGGACTTCAACGCCTTCGGTAGCCATGGTTCCACTTCTCACGTCCGGTTCCGTCATTTTCATTCACTTCTCGACGCCCGAAATTTCCTTCAGGAGAAGGATTGTGATATATGTGGCGTGGAGATAACTGATAACGCCGTGGCTGTCAATCAGCATCCTTTCAAGAGGAGCACCGCTTTTCTTCTCGGCAACGAGGGAACAGGGCTTTCTGCTAAAGAGTGTGCAATCTGCGACTTCTTCATTTACATCCCACAATATGGTGTCGGCACCGCTTCTTTGAATGTAACTGTAGCTGCTTCAATTGTCCTACATCATTTTGGTGTTTGGGCAGGATTTCCCGAAAGATGTCGTGATGGTAACAAGTTTATAGTGGCCGAAAGACCAGTAAAGCAAGGCAAGCGGAATTATTGTCCTGAAACAGAAGAATCTATTGTTGAAGAGCGAAAGTCCAGGCGGGATAATGCTTCGAAAGGCTTCTTTGATGAGGGAACGATCGATGATTCGACATCCAACCTTCTTGATACATTGTTTATTAACGAATGA 3477 44.0 MASMVAKPSCPATSNHGPSSVLVQEKGSRNKRKYRADPPLGDLNKITSSSQDECPSYDFSAEKFEISSSLGQIGACDLCSISQEFSAGLKLDLGLSNGGSPDIGIDWPRGELEVDEFQDVDWSDLTEAQLVELILCNLDTIFKAAIKKVVASGFTEEVAIKAVSRSGICFGCKDIMSNVVDNTLAFLRSGQEIDQSREHYFEDLQQLEKYILAELVCVLREVRPYFSTGDAMWCLLVSDMSVSHACTMDSDPSNAVVCDGSSNEGSTNSTPQLEAEAKSSELNFPKPLKPISPISCAHSSQSDGPATLGAPNLTKPKDPLFTSVSVSDKELQNSTSDVARESFNVGGNPQTSVSEEKIGSSRRVHSNIMKREYMLRQKSLHVDKNFRTYGQKGPSRAGKVTGLGSLMLDKKLKSVSGSTAVNFKNASLKISKAMGIDVAQDNGNHNPTTIDIPSSSLSFNLENNKTVSPFSKINVLSSMPAPSSPLALPATNTSSALPAAETDLSLSLPTKSNEPSVPISCNAEPSTSSFVEKPYEKSLGQWFPKDKKDEMVLKLVPRARELQSQLQEWMEWANQKVMQAARRLSKDKAELKTLKQEKEEVERLKKEKQTLEENTKKKLSEMEHALCKASGQVELANSAVRRLEVENAALRQEMEVAKLRATESAATYQEVSKREKKTLVNVQSWEKTKMLFQEEHTVEKRKLKQLIQELEQARDVQEQLEGRGKMEARAKDELLMQAASLRKEREQIEASLKAKEDTIKLKAENNLLKYKSDIQKLEKEISQLRLKTDSSRIAALKRGIDGSYASRLIDTRNSTDHNESWTPNVSESMKDLYEYSGTGSVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQVGTAVKRHRIEKNSSDARARPNCEPVLLLRSAARIELQALSKPSIRKPHHFLFNHFIAIEFGMGFESYVVVHNIAKRHNVGTLARSATAFGVSEVILVGRRDFNAFGSHGSTSHVRFRHFHSLLDARNFLQEKDCDICGVEITDNAVAVNQHPFKRSTAFLLGNEGTGLSAKECAICDFFIYIPQYGVGTASLNVTVAASIVLHHFGVWAGFPERCRDGNKFIVAERPVKQGKRNYCPETEESIVEERKSRRDNASKGFFDEGTIDDSTSNLLDTLFINE 1158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9269337 9278211 + CmaCh06G014470.1 Cma06g01447 297001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01447 1158 MobiDBLite consensus disorder prediction 294 308 - -
Cma06g01447 1158 Pfam Zinc finger, C3HC4 type (RING finger) 844 875 - -
Cma06g01447 1158 MobiDBLite consensus disorder prediction 1 52 - -
Cma06g01447 1158 Coils Coil 693 723 - -
Cma06g01447 1158 Pfam Family of unknown function (DUF6592) 138 248 IPR046527 -
Cma06g01447 1158 MobiDBLite consensus disorder prediction 318 357 - -
Cma06g01447 1158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 826 896 IPR013083 -
Cma06g01447 1158 SUPERFAMILY alpha/beta knot 944 1084 IPR029028 -
Cma06g01447 1158 Coils Coil 731 758 - -
Cma06g01447 1158 MobiDBLite consensus disorder prediction 293 360 - -
Cma06g01447 1158 MobiDBLite consensus disorder prediction 257 280 - -
Cma06g01447 1158 MobiDBLite consensus disorder prediction 257 277 - -
Cma06g01447 1158 MobiDBLite consensus disorder prediction 506 530 - -
Cma06g01447 1158 Coils Coil 577 621 - -
Cma06g01447 1158 CDD SpoU-like 945 1084 - -
Cma06g01447 1158 Coils Coil 633 660 - -
Cma06g01447 1158 MobiDBLite consensus disorder prediction 8 25 - -
Cma06g01447 1158 PANTHER OS05G0141500 PROTEIN 14 878 IPR046934 -
Cma06g01447 1158 Gene3D - 943 1088 IPR029026 -
Cma06g01447 1158 Pfam SpoU rRNA Methylase family 946 1082 IPR001537 GO:0003723|GO:0006396|GO:0008173
Cma06g01447 1158 Coils Coil 760 794 - -
Cma06g01447 1158 PANTHER OS05G0141500 PROTEIN 14 878 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01447 - - - csv:101214366 1464.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01447 Cma-Chr6:9269337 Cma16g01147 Cma-Chr16:8819354 3.67E-25 dispersed
Cma11g01153 Cma-Chr11:6658431 Cma06g01447 Cma-Chr6:9269337 1.21E-07 transposed
Cma14g01661 Cma-Chr14:12428989 Cma06g01447 Cma-Chr6:9269337 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g396 . . . . . Bpe14g01162 . . . . Cma06g01447 . Car06g01250 . Sed02g1294 Cpe08g00227 . Bhi01g00892 Tan10g0918 Cmetu06g1283 . Hepe05g1500 . . . . . . . . . . . Cone7ag0193 Cone4ag0186 Lsi05g01478 . . Cme06g00669 Blo02g00565 . . . . . . . . Cmo06g01449 . . . . . . . . . . . . . . Cla05g00598 Cam05g0658 Cec05g0665 Cco05g0662 Clacu05g0651 Cmu05g0620 Cre05g0689 . Csa03g01394 Chy06g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01447 Cma_Chr06 FPKM 12.461864 13.664474 10.389004 10.431754 6.269103 5.698802 5.984926 13.670501 14.030697 14.277839