Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01450 ATGGCCGCCTCTGCCACCGAGAAAACCCTAACCGGCGTTGGAAACCTAATTCGCCTCCTCCCCACCGGTACTGTCTTCCTCTTCCAATTCCTCAGCCCAATCCTCACCAACAGCGGCCAATGCGAACCAATCAACAAATCTCTCTCTCTAATTTTGATCCTCTTCTGTGGTCTCTCCTGTTTCCTCTCCTCCTTCACTGACTCCTACACTGGCGACGACGATGCCCTCCACTGGGGCTTTGCGACCGCTTCCGGAATGTGGCCGTCGCCGGAGTCCAAGGAGGTTGATCTGTCACCCTACAAGCTTAGGGCAGGGGATTTTGTACACGCCACCTTTTCGGCTCTGGTTTTTGGAGCTTTGGTGGTTCTAGACTCCGATACTATGAAGTGCTTCTTGCCGAGCTTTGCGGCAGCAGATAAATTGTTGGTTCAAGTTCTGCCGCCGGTCGTCGGAGCGGTTTCGAGCGTGGTGTTTGTGATGTTTCCTAATACTCGCCATGGCATCGGGTACTATGATTCCTCTGCAACTCCCGGCGGCGCTAATTCGCCGCTGGTTCGGAGAGGTGCCTGA 570 54.56 MAASATEKTLTGVGNLIRLLPTGTVFLFQFLSPILTNSGQCEPINKSLSLILILFCGLSCFLSSFTDSYTGDDDALHWGFATASGMWPSPESKEVDLSPYKLRAGDFVHATFSALVFGALVVLDSDTMKCFLPSFAAADKLLVQVLPPVVGAVSSVVFVMFPNTRHGIGYYDSSATPGGANSPLVRRGA 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9281135 9281704 - CmaCh06G014500.1 Cma06g01450 297004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01450 189 PANTHER PROTEIN DMP3 4 176 IPR007770 -
Cma06g01450 189 Pfam Protein of unknown function (DUF679) 13 170 IPR007770 -
Cma06g01450 189 PANTHER PROTEIN DMP2 4 176 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01450 - - - bhj:120090398 322.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01450 Cma14g01656 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01450 Cma-Chr6:9281135 Cma20g00573 Cma-Chr20:2753523 9.82E-38 dispersed
Cma14g01656 Cma-Chr14:12405840 Cma06g01450 Cma-Chr6:9281135 3.37E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g394 . . . . . . . . . . Cma06g01450 Cma14g01656 Car06g01251 Car14g01490 . Cpe08g00226 Cpe03g01400 . . . . . . . . . . . . . . . . Cone7ag0191 Cone4ag0185 Lsi05g01481 . . Cme06g00671 . . . . . Bpe13g00637 . Bma06g01527 . Cmo06g01450 Cmo14g01701 . . . . . . . . . . . . . Cla05g00600 Cam05g0660 Cec05g0668 Cco05g0664 Clacu05g0654 Cmu05g0623 Cre05g0692 . Csa03g01397 Chy06g00640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002299 0 3 0 1 1 2 2 3 3 2 2 3 2 3 3 2 3 2 2 3 2 1 1 3 1 4 2 3 3 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01450 Cma_Chr06 FPKM 14.108772 13.239177 0.452335 0.766155 3.068141 2.104686 3.16047 0.125277 0.265423 0.167787
Cma06g01450 Cma_Chr00 FPKM 11.830189 10.900874 0.77539 0.983319 4.475082 2.526408 4.842604 0.224554 0.237879 0.188843