Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01452 ATGTGCATTCCTTCCATTTCTCAGAGTTTTGCAGAGCTTGTCCAAAAACACAAATGGTTTTCTGGATCGTCTTGTTCCTATTTGGGTTGTCAAAAGAAGCTTCAGTGCGTAAAAATGGAGGTGGGATCGATGCAGAGACAGTGGGTTCAGTATATTAAATCATGGCTGGGTGAGGGGACTCTGGATAGTCAGTATTTGCAGCTTTTGCAACTGCAAGATGAGAGTAATCCAACTTTTGTTTCTGAAGTGGTGACTCTTTTCTTTGAAGATACCGAGGAGCTTCTCAATAAACTCAGCCTTGCTTTATCACAGCCAAGTGTGGACTTCAAAAAGATTGATGATCATGTGCACCAGCTTAAGGGCAGCAGCTCCAGCATAGGTGCACTTAGAGTGAAAAACGCCTGCATTGCCTTCCGGAATGTCTGCGAGCAACAGAGTGCAGAAGGGTGTTTAAGATGCCTGCAACAAGTACAGCAAGAATTCTATTGTGTTAAAGAGAAGCTCAGTTACCTATTTGCACTCGAAAAACGGATTTTGAATGCTGGAGGATCCATTCCAATGGACTTGGGGTCTTAA 576 43.4 MCIPSISQSFAELVQKHKWFSGSSCSYLGCQKKLQCVKMEVGSMQRQWVQYIKSWLGEGTLDSQYLQLLQLQDESNPTFVSEVVTLFFEDTEELLNKLSLALSQPSVDFKKIDDHVHQLKGSSSSIGALRVKNACIAFRNVCEQQSAEGCLRCLQQVQQEFYCVKEKLSYLFALEKRILNAGGSIPMDLGS 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9289823 9293888 + CmaCh06G014520.1 Cma06g01452 297006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01452 191 Gene3D HPT domain 35 190 IPR036641 GO:0000160
Cma06g01452 191 CDD HPT 80 161 IPR008207 GO:0000160
Cma06g01452 191 PANTHER - 39 186 IPR045871 GO:0000160|GO:0009927|GO:0043424
Cma06g01452 191 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 44 176 IPR036641 GO:0000160
Cma06g01452 191 Pfam Hpt domain 82 159 IPR008207 GO:0000160
Cma06g01452 191 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 76 171 IPR008207 GO:0000160
Cma06g01452 191 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 1 39 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01452 K14490 AHP; histidine-containing phosphotransfer peotein - csv:101215807 242.276
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01452 Cma17g00292 CCT
Cma06g01452 Cma17g00292 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01452 Cma-Chr6:9289823 Cma14g01654 Cma-Chr14:12395828 1.11E-69 dispersed
Cma17g00292 Cma-Chr17:1563551 Cma06g01452 Cma-Chr6:9289823 1.24E-63 wgd
Cma06g01452 Cma-Chr6:9289823 Cma08g01193 Cma-Chr8:7330763 1.45E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g388 . . . . . Bpe14g01159 . . Cmo08g01164 Cmo17g00280 Cma06g01452 . Car06g01254 Car14g01488 . Cpe08g00223 Cpe03g01398 . . . . . . . Cla06g00522 Cam06g0561 Cec06g0561 Cco06g0568 Clacu06g0549 Cmu06g0545 Cre06g1314 Cone14ag0800 . . . . . Chy11g01453 Cme06g00676 Blo02g00569 . Bda11g00549 . . Bpe13g00640 . Bma06g01526 . Cmo06g01453 Cmo14g01698 . Cma17g00292 Car08g01069 Car17g00269 Cpe12g00244 Cpe17g00106 Bhi12g01760 . . . . . . Cla05g00602 Cam05g0663 Cec05g0672 Cco05g0667 Clacu05g0657 Cmu05g0626 Cre05g0695 Lsi09g01381 Csa03g01401 Chy06g00644 Cme11g01958
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000762 3 8 1 5 3 2 3 2 2 3 2 2 3 3 3 4 2 5 4 2 3 3 2 3 2 2 3 5 6 3 94
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01452 Cma_Chr06 FPKM 74.793579 85.237778 30.312103 33.290104 6.447799 5.79076 4.999817 10.802194 12.884677 12.95438