Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01460 ATGACTATGGAGCTTTTCGAAATTCGACCGGGCGAACTTAAACTCACTTTTGAGTTGAAGACTCAAAGTTCATGCTTGATTCAGCTTATCAATAAGTCTGATCAGCATATTGCTTTCAAGGTAAAAACTACGTCTCCCAAGAAGTACTGTGTTCGACCCAATACTGGCATCATTAAGCCTAAGGATACGTGTGACTTCACAGTCACCATGCTAGCTCAGCGTACGGCTCCACCTGATATGCAATGCAAAGACAAATTCCTGGTCCAAGGGACAGTCATTCCTGCTGGAACATCTGAAGAGGACATCACTCCTGACTTGTTTGCAAAGGGTAGTGGCAAGCACATTGAAGAGAAGAAGCTGAAGGTTTTTCTAGTAAGCGCGACGCCACCTCCTGTTTTGTTACCAATTAATGGAGAGCTGAAACTAGATCCAAATCTTGAAACTTCCTTGCCAAAAGATAGAATGCAGACGGGAGTTGAGAACATACCTCCGCCTCTCAAGGTTGCTGAAGATGCCAATGGACTTGATACCCGCAAACACATAGATGAGCTTAGACCAGTTGATTCCCCCTTACAGTTATCTCCACCTTATAAGGTTGCTGAGGGGGTTGAGAAACTTGATACTTGTAAAGATTCAGATGACAATCGAGAAGCTGAGGATGTTGCAACGAGACAAAATGAGGATGCAGTGGCCGAACCAATTGGCAATGTTGAAACCACACCAGTTGAGGGAATTGAGGAATCAAAACCAGTGAAGGATCTGCCAGAGTTGAACTTAACGAAAGACTTGTTAGAGCTAAAGTCAAAGCTAACTCTCATGGATGCAGAACTGATAGAGGCTGAAGCTACCATAATGAGGCTAAAACAGGAGAGGATGGTAACCACTCAAGAAAGGGAAATGCTCAAGCGTGACTTGGAGACATTGAGAAAAACTGGGCACAGAAGCATCCAAGTAGGCTTCCCCTTAATGTATGTTGTGACGGTTGCTTTGATCAGCAACATCACCTCTTAA 1011 44.02 MTMELFEIRPGELKLTFELKTQSSCLIQLINKSDQHIAFKVKTTSPKKYCVRPNTGIIKPKDTCDFTVTMLAQRTAPPDMQCKDKFLVQGTVIPAGTSEEDITPDLFAKGSGKHIEEKKLKVFLVSATPPPVLLPINGELKLDPNLETSLPKDRMQTGVENIPPPLKVAEDANGLDTRKHIDELRPVDSPLQLSPPYKVAEGVEKLDTCKDSDDNREAEDVATRQNEDAVAEPIGNVETTPVEGIEESKPVKDLPELNLTKDLLELKSKLTLMDAELIEAEATIMRLKQERMVTTQEREMLKRDLETLRKTGHRSIQVGFPLMYVVTVALISNITS 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9330290 9335104 + CmaCh06G014600.1 Cma06g01460 297014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01460 336 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 332 IPR016763 GO:0005789
Cma06g01460 336 MobiDBLite consensus disorder prediction 148 170 - -
Cma06g01460 336 Pfam MSP (Major sperm protein) domain 8 102 IPR000535 -
Cma06g01460 336 Gene3D Immunoglobulins 2 127 IPR013783 -
Cma06g01460 336 PANTHER VESICLE-ASSOCIATED MEMBRANE-PROTEIN-ASSOCIATED PROTEIN-RELATED 1 332 - -
Cma06g01460 336 Coils Coil 270 304 - -
Cma06g01460 336 ProSiteProfiles Major sperm protein (MSP) domain profile. 5 125 IPR000535 -
Cma06g01460 336 SUPERFAMILY PapD-like 5 133 IPR008962 -
Cma06g01460 336 PIRSF VAMP_assoc_prot 1 336 IPR016763 GO:0005789
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01460 - - - csv:101217249 551.977
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01460 Cma14g01647 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01169 Cma-Chr5:9075949 Cma06g01460 Cma-Chr6:9330290 1.54E-50 dispersed
Cma06g01460 Cma-Chr6:9330290 Cma12g01094 Cma-Chr12:8648754 2.61E-53 dispersed
Cma14g01647 Cma-Chr14:12315919 Cma06g01460 Cma-Chr6:9330290 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g368 . . . . . . . . . . Cma06g01460 Cma14g01647 Car06g01260 Car14g01480 . Cpe08g00218 Cpe03g01391 Bhi01g00928 Tan10g0943 . . . . . . . . . . . . . . . . Lsi05g01497 . . Cme06g00685 . . Bda11g00542 . . Bpe13g00647 . Bma06g01519 Sed01g4000 Cmo06g01461 Cmo14g01691 . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . . Csa03g01409 Chy06g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006295 1 6 0 1 1 1 2 1 1 1 0 0 2 1 1 2 0 0 2 1 1 1 1 1 1 1 1 3 2 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01460 Cma_Chr06 FPKM 5.459446 7.109525 1.777755 2.507457 11.351536 11.804991 11.086476 1.306678 1.186024 1.375703
Cma06g01460 Cma_Chr00 FPKM 6.611296 6.920649 0.796032 0.901099 5.240483 7.481043 7.454494 0.5193 0.483342 0.524633