Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01463 ATGTCTTTGAAGAGCATAATTCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTGCAGGATGGATCGACGGCCGAAGTCGGTAATGGTTTGGCGCAGAGCTGTTGGGTTCACATGCCTCAGGAGTTGCTGAGAGAGGTTTTGATTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCTTGCGCTGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCTGGCACATTGACGTTTCCTATCTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGTTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTATCTTAGTTTGACGAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCACTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTATTGGAAAATTGAGATCTAACTTTTTAGGAACCAAGTTCACAATCGTTGATGGACAGCCACCTCATGCGGGAGCCAAGATCTCAAGAAGTCGCTCCTCTAGGCTTGTAGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGAGAGGCTAATATGGTGTATGTCATCATCAGGGGTCCAAGGAGAATGCATTGCGTCATGGATGCTATTCCTGCCTCTGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACCGAATTCTCCTCAAGCCGTATAGACTTTCTTTCATCGATGAGATTTTCCTGGTCGAAATCGAATGAACCAAATCACACCGACGATCAATCATCGGGATCTTCATCCAATCAGAAAGATGGACTTCTGGTGCTCAGAAACAAGGCTCCACGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTTCACGGACGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGACCTGCTGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACAATGGACTACAGGTATCCAATCTCAGCGTTTCAGGCCTTCTCCATCTGCCTCAGCAGCTTTGACACAAAGATCGCTTGTGAATGA 1203 47.05 MSLKSIIQEMRSRSRRVVQDGSTAEVGNGLAQSCWVHMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGTLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFIGKLRSNFLGTKFTIVDGQPPHAGAKISRSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSREANMVYVIIRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSSSRIDFLSSMRFSWSKSNEPNHTDDQSSGSSSNQKDGLLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFSICLSSFDTKIACE 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9347211 9350624 + CmaCh06G014630.1 Cma06g01463 297017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01463 400 SUPERFAMILY Tubby C-terminal domain-like 84 400 IPR025659 -
Cma06g01463 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Cma06g01463 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Cma06g01463 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Cma06g01463 400 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cma06g01463 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Cma06g01463 400 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cma06g01463 400 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cma06g01463 400 Pfam Tub family 96 395 IPR000007 -
Cma06g01463 400 Pfam F-box domain 37 82 IPR001810 GO:0005515
Cma06g01463 400 Gene3D Tubby Protein; Chain A 92 400 IPR025659 -
Cma06g01463 400 ProSitePatterns Tub family signature 1. 330 343 IPR018066 -
Cma06g01463 400 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515
Cma06g01463 400 PANTHER TUBBY-RELATED 1 400 - -
Cma06g01463 400 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 400 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01463 Cma08g01203 CCT
Cma06g01463 Cma17g00306 CCT
Cma06g01463 Cma08g01203 ECH
Cma06g01463 Cma17g00306 ECH
Cma06g01463 Cma14g01645 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01463 Cma-Chr6:9347211 Cma16g00365 Cma-Chr16:1736649 3.09E-147 dispersed
Cma14g01645 Cma-Chr14:12300711 Cma06g01463 Cma-Chr6:9347211 0 wgd
Cma17g00306 Cma-Chr17:1640574 Cma06g01463 Cma-Chr6:9347211 0 wgd
Cma06g01463 Cma-Chr6:9347211 Cma08g01203 Cma-Chr8:7397977 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35276 PF01167 Tub 5.20E-106 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01463 K19600 - csv:101217713 729.554