Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01464 ATGGGCTGCGTTTTTGGGCGAGAGGTTTCTGCGAAGCCCGTTCAGAGACCGGAGGAGAGACCCAACGCCGATGAGGCAATCAGGGCTTCTGCGAAGGCGGAGGTTCGTGAGATTCGAGCTGATGCTTCCGCTAATGTCCGCAATGGCGGAAGTAGGAACGAGGTTGACGATGATAGAGGTTCGAGGCCGAGGCGGCGATCGTCGAGGCCGAATCCGAGATTGAGTAATCCGCCGAAGCATGGGGAGCAAGTCGCCGCTGGTTGGCCGTCTTGGCTCTCCGCCGTCGCCGGCGAAGCTATCAATGGGTGGATTCCTCGCCGTGCTGACAGTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACGTATAGTAATGTGTACAAAGCCAGGGACTCATTGACAGGGAAGATTGTGGCTCTGAAGAAGGTTCGTTTCGACAATTTGGAGCCCGAGAGCGTCAAGTTTATGGCCCGGGAAATTCTCATTCTGCGGCGTTTGGATCATCCAAATGTCGTTAAACTCGAAGGTTTGGTGACGTCCCGGATGTCGTGTAGTTTGTATCTTGTATTTGAATACATGGAGCACGATCTGGCTGGACTTGCTGCAAGCCCTGGGATCAAGTTTACGGAATCGCAGGTTAAATGTTACATGAACCAATTGTTATCAGGGCTTGAACATTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGATCAAATCTTCTGATCGATAACGATGGGATCCTGAGGATAGCTGATTTCGGATTGGCGTCTGTCTTTGATCCTAACCACAAGCATCCAATGACAAGTAGGGTGGTTACGCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGTGTCGGTGTAGACCTCTGGAGCGCTGGCTGCATTTTAGCCGAGCTGTTAGCTGGAAAGCCTATCATGCCCGGTCGCACCGAGGTTGAGCAGCTGCATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGAATACTGGAAAAAGTCGAGGTTGCCTCATGCAACAATATTCAAGCCTCAACATTCATACAAGAGATGCATATCGGAGACATTTAAAGACTTCCCGCCGTCATCCCTGCCACTAATCGAGACGCTTCTCGCCATCGACCCCGCTGAACGCCTAACTGCCACTGCTGCTTTACATAGTGAATTTTTCACTACAAAGCCATATGCTTGTGAGCCTTCCAGTCTTCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTACGGGATGAAGAAGCTAGAAGGCTAAGAGCTGTTGGCAGAAGCAATGCAGATGGAGTGAAGAGAACACGGGCACGCGATCGAGCTGTTCGGGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGACGGCGTCTTATAACACATGCAAATGCGAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCGATTGGCTACCAACTAGGATCTTCGCATCAGGTCGATCCGATCTACGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCGTATCCAAAAGCAAGCATCCAAACATGGTCTGGTCCCTTGATGGACCCAGGTGCTGTTGGTGCTCCTCCAAGAAGGAGAAAACACACTGCAGGTCATTCATCAAGATCATCATCCAAGGACTTGAATAAGGATAAAAATTCTGCTTGTATCTAA 1710 49.47 MGCVFGREVSAKPVQRPEERPNADEAIRASAKAEVREIRADASANVRNGGSRNEVDDDRGSRPRRRSSRPNPRLSNPPKHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDSLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTESQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILRIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEEYWKKSRLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAVGRSNADGVKRTRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGAIGYQLGSSHQVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPGAVGAPPRRRKHTAGHSSRSSSKDLNKDKNSACI 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9351664 9355173 - CmaCh06G014640.1 Cma06g01464 297018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01464 569 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01464 569 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01464 569 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01464 569 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Cma06g01464 569 MobiDBLite consensus disorder prediction 475 508 - -
Cma06g01464 569 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Cma06g01464 569 CDD STKc_CDK9_like 111 395 - -
Cma06g01464 569 MobiDBLite consensus disorder prediction 1 83 - -
Cma06g01464 569 SUPERFAMILY Protein kinase-like (PK-like) 104 400 IPR011009 -
Cma06g01464 569 PANTHER CELL DIVISION PROTEIN KINASE 56 549 - -
Cma06g01464 569 Gene3D Transferase(Phosphotransferase) domain 1 194 434 - -
Cma06g01464 569 MobiDBLite consensus disorder prediction 526 569 - -
Cma06g01464 569 PANTHER OS01G0367700 PROTEIN 56 549 - -
Cma06g01464 569 MobiDBLite consensus disorder prediction 12 41 - -
Cma06g01464 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Cma06g01464 569 MobiDBLite consensus disorder prediction 51 65 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01464 Cma14g01644 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01464 Cma-Chr6:9351664 Cma13g00826 Cma-Chr13:6918269 0 dispersed
Cma20g00202 Cma-Chr20:955550 Cma06g01464 Cma-Chr6:9351664 0 dispersed
Cma07g00772 Cma-Chr7:3464738 Cma06g01464 Cma-Chr6:9351664 1.97E-147 transposed
Cma10g01091 Cma-Chr10:7213800 Cma06g01464 Cma-Chr6:9351664 0 transposed
Cma11g01252 Cma-Chr11:8335758 Cma06g01464 Cma-Chr6:9351664 0 transposed
Cma12g01100 Cma-Chr12:8707865 Cma06g01464 Cma-Chr6:9351664 0 transposed
Cma14g01644 Cma-Chr14:12296897 Cma06g01464 Cma-Chr6:9351664 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68662 PF00069 Pkinase 2.20E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01464 K08819 - csv:101217952 992.26