Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01467 ATGGGGTTGCTCCATCTTCCACTTGATGTTGCCCTGAAAATTGCTTCTTCTCTTCAGGCATCGGACATTTGTGCTTTGGGCTGTTGCTCGCGGTTATGTCGGGAACTTTTCGATTCCGATTGTTTGTGGGAGTCTCTTGCAAGAGAAAGATGGCCTTATATCTATGCTTCTTCATCTACTGGTTCTTCTTCGTCAACTCCCGCAAAATTCCCCATATCCATGGGATGGAAAAGCTTCTACATCCTGAGGCATATTGAGATATTGGGAAGAGCCCAAGCAGCAGTCAAGTTTATAGAACAATGCCCTCCTTTGACACCGATTGAGGGACAATACTCGGCTTGCAGGATTCAATGCCCTCCTTTGACACCGATTGAGGGTGGAGACTATCTCAGGACAATACTCGGCTTGCAGGATTTGAAGCTTAGTTTTATAGATGTTCAAATGGTGCTTTTCAAACCTCAACTTAACGGGCTGCTGAACTTGGTTGGCTTACACTACTGCACAAATTTGCTTGAAATCCCTGCCTATCGAGTCATGGAAGCACTTCAAAGATGCAAGATCTCAGAGAAACATGTATGTGTGAAATGGTGGAAGCTAGGAAGATGGTTTTATGGGTTCCGCATGAGAGACGAACAACATACTCGTCGAGTCTCTTTGGCAGAACTTGTAACGGCAGAAGGGGAAGACGTTCTTGGGGTGCTTAGCCGAGGTCCTGTTCATGAGGTGCTCCGGGTTCAGTTCTTGCATGAGTTTTCTCAATATTGA 765 45.75 MGLLHLPLDVALKIASSLQASDICALGCCSRLCRELFDSDCLWESLARERWPYIYASSSTGSSSSTPAKFPISMGWKSFYILRHIEILGRAQAAVKFIEQCPPLTPIEGQYSACRIQCPPLTPIEGGDYLRTILGLQDLKLSFIDVQMVLFKPQLNGLLNLVGLHYCTNLLEIPAYRVMEALQRCKISEKHVCVKWWKLGRWFYGFRMRDEQHTRRVSLAELVTAEGEDVLGVLSRGPVHEVLRVQFLHEFSQY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9359829 9363072 - CmaCh06G014670.1 Cma06g01467 297021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01467 254 ProSiteProfiles F-box domain profile. 1 46 IPR001810 GO:0005515
Cma06g01467 254 PANTHER F-BOX ONLY PROTEIN 4 2 247 IPR039588 GO:0031146
Cma06g01467 254 Gene3D - 2 87 - -
Cma06g01467 254 PANTHER F-BOX ONLY PROTEIN 4 2 247 - -
Cma06g01467 254 SUPERFAMILY F-box domain 3 85 IPR036047 GO:0005515
Cma06g01467 254 SMART fbox_2 6 46 IPR001810 GO:0005515
Cma06g01467 254 Pfam F-box domain 3 44 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01467 - - - mcha:111009254 362.073
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01467 Cma-Chr6:9359829 Cma14g01643 Cma-Chr14:12287005 1.57E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g357 . . . . . Bpe14g01148 . . . . Cma06g01467 . Car06g01265 . Sed02g1220 Cpe08g00213 Cpe03g01387 Bhi01g00951 Tan10g0951 Cmetu06g2030 . Hepe05g1482 . Lcy11g1452 . . . . . . . . . . . Lsi05g01503 . . Cme06g00690 . . . . . . . . . Cmo06g01467 Cmo14g01686 . . . . . . . . . . . . . . . . . . . . . Csa03g01415 Chy06g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011885 1 1 1 0 1 1 2 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01467 Cma_Chr06 FPKM 8.404796 12.284314 9.447232 9.463962 4.933504 4.691115 4.885014 10.37928 10.835435 11.574118
Cma06g01467 Cma_Chr00 FPKM 6.254896 7.707267 9.548919 9.925868 5.139297 5.242151 4.977322 10.016663 10.130114 12.499331
Cma06g01467 Cma_Chr00 FPKM 6.272986 6.501335 7.270608 6.231245 3.22104 2.616424 2.075181 5.539785 6.17578 7.596882