Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01475 ATGGGTGGTTGTTTTCCTTGTTTTGGATCCTCCGATCGTAATGGCGCAAAGGAAGCTACTAAGAAGGATTCAGCTAAGGATGGCGCCACTGCCCAGTCTCATCGTGTTAGCAGAGTGAGCTCAGATAAATCGAAGTCATGGAGTGTATCTGATGCTAAGAACGAACCAACTGTTCAAAAGGATGGAACAACGGCACATATTGCTGCTCAAACGTTTACGTTTCGGGAGCTCGCTACAGCGACGAAGAACTTTAGACCTGAATGCTTATTGGGAGAAGGGGGGTTTGGACGGGTTTACAAGGGCCGCTTGGAGAGCACGGGACAGGCAGTGGCTGTGAAGCAGCTCGACCGGAATGGTCTTCAAGGAAATCGGGAATTTTTGGTTGAAGTTCTAATGCTTAGCCTGTTACATCACCCAAATCTTGTTAACTTGATAGGCTATTGTGCTGATGGCGATCAACGGCTTCTTGTCTACGAGTTCATGCCATTGGGGTCGTTGGAAGATCATTTACATGATTTTCCACCAGATAAGGAGCCCTTGAATTGGAATACTAGAATGAAGATCGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCGAACCCGCCTGTCATATATCGAGACTTGAAGTCGTCCAATATTCTTCTAGACGAGGGCTACCATCCCAAGCTGTCAGATTTCGGTCTTGCGAAACTAGGTCCAGTTGGTGATAAGACTCACGTCTCGACGAGAGTAATGGGAACATATGGTTATTGTGCTCCGGAGTATGCTATGACTGGTCAACTCACTCTCAAGTCGGATGTATATAGTTTTGGAGTCGTCTTTCTTGAACTTATCACAGGGCGCAAGGCGATCGATAATACCAGAGGTCCGGGGGAGCATAATCTTGTAGCGTGGGCTCGGCCACTTTTTAAAGATCGTCGAAAGTTCCCTAAGATGGCCGATCCGTTGCTGCAAGGTCGTTATCCCACACGGGGGCTTTATCAGGCATTGGCAGTTGCAGCAATGTGCTTGCAAGAGCAGGCTGCTTCTCGACCTCTAATCGGGGACGTCGTTACTGCTTTGACGTATTTAGCCTCGCAAACTTATGATCCTAATACAGCTGCTTCTCAAAGCAATCGAATGAGTGTTTCTACTCCACAATCCCGAGATGAGCGGAGAGGCTTGCCAGATGGATTGGATAGCCCTGATGAGCGTGGTCATGGATGTTGTTCCCCGACAAACTACAGAAACTCTGGAGGTACCGAGCTAAGCAGAATTGACACGGGAGGCGGGTCTGGTCGAAAATGGGAATTAGATGAGTTAGAACAACAAGAGTCTCTACGAGACAGTCCTGCATATACAGGACGAGCAAGGGAAACACAGAAAAACCGCGACGTAAACAGAGAACGTGCAGTCGCAGAAGCAAAAATGTGGGGTGAAAACTGGAAAGAGAGAAACCGGGCGAACGTGCAAGGCAGCTTCGACAGTTCATGA 1485 48.08 MGGCFPCFGSSDRNGAKEATKKDSAKDGATAQSHRVSRVSSDKSKSWSVSDAKNEPTVQKDGTTAHIAAQTFTFRELATATKNFRPECLLGEGGFGRVYKGRLESTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDFPPDKEPLNWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPTRGLYQALAVAAMCLQEQAASRPLIGDVVTALTYLASQTYDPNTAASQSNRMSVSTPQSRDERRGLPDGLDSPDERGHGCCSPTNYRNSGGTELSRIDTGGGSGRKWELDELEQQESLRDSPAYTGRARETQKNRDVNRERAVAEAKMWGENWKERNRANVQGSFDSS 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9381522 9385652 - CmaCh06G014750.1 Cma06g01475 297029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01475 494 SUPERFAMILY Protein kinase-like (PK-like) 70 377 IPR011009 -
Cma06g01475 494 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 1 488 - -
Cma06g01475 494 MobiDBLite consensus disorder prediction 429 443 - -
Cma06g01475 494 Pfam Protein kinase domain 89 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01475 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Cma06g01475 494 Gene3D Transferase(Phosphotransferase) domain 1 161 385 - -
Cma06g01475 494 CDD STKc_IRAK 90 359 - -
Cma06g01475 494 PANTHER OS07G0668900 PROTEIN 1 488 - -
Cma06g01475 494 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Cma06g01475 494 MobiDBLite consensus disorder prediction 369 466 - -
Cma06g01475 494 MobiDBLite consensus disorder prediction 383 401 - -
Cma06g01475 494 MobiDBLite consensus disorder prediction 30 59 - -
Cma06g01475 494 Gene3D Phosphorylase Kinase; domain 1 54 160 - -
Cma06g01475 494 MobiDBLite consensus disorder prediction 15 29 - -
Cma06g01475 494 MobiDBLite consensus disorder prediction 408 422 - -
Cma06g01475 494 ProSiteProfiles Protein kinase domain profile. 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01475 494 Coils Coil 453 473 - -
Cma06g01475 494 SMART serkin_6 84 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g01475 494 MobiDBLite consensus disorder prediction 1 59 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01475 Cma14g01637 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g02016 Cma-Chr1:12910712 Cma06g01475 Cma-Chr6:9381522 2.56E-165 dispersed
Cma04g00257 Cma-Chr4:1266414 Cma06g01475 Cma-Chr6:9381522 0 dispersed
Cma04g01234 Cma-Chr4:6306340 Cma06g01475 Cma-Chr6:9381522 0 dispersed
Cma06g00343 Cma-Chr6:1593759 Cma06g01475 Cma-Chr6:9381522 0 dispersed
Cma06g01475 Cma-Chr6:9381522 Cma17g01421 Cma-Chr17:9377727 0 dispersed
Cma08g00073 Cma-Chr8:381913 Cma06g01475 Cma-Chr6:9381522 7.25E-13 dispersed
Cma11g00955 Cma-Chr11:5043264 Cma06g01475 Cma-Chr6:9381522 6.13E-151 dispersed
Cma12g00680 Cma-Chr12:3678680 Cma06g01475 Cma-Chr6:9381522 8.97E-155 dispersed
Cma14g01637 Cma-Chr14:12259054 Cma06g01475 Cma-Chr6:9381522 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68663 PF00069 Pkinase 1.10E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01475 - - csv:101207561 900.582