Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01477 ATGGAGAGAGTTAGAAGGATGGTTTCAGAGAGGCCGGTCGTGATCTTCAGCAAGAGCACGTGCTGCATGAGCCACACTGTGATGAGGCTGCTGAGTGGGTTTGGGGTTAACCCGGCGGTGCACGAGGTGGACCAGATCGCTCGAGGTAGGGAGATCGAGCAGGCTCTGTCTATGCTTGGCTTTAGCCCCACGGTTCCGGCTGTCTTCATTGGCGGCCAACTGGTCGGTGGAACCAATGAAATTATGACACTTCATCTTAATCGCTCCCTCATTCCCATGCTTACTGCTGCTGGCGCTTTCCTCGTTTATCTGGTTCTTCACATGGCGCAACTTAGCGATTTACTTGTACCCGCCTATGCTTCCTTACAAGGATTCATTGTCTTGTTAATTGATTTCTTCTTTCTTCTGGATTATTTCCGAGTTTTTCTATCACTATCCGCTTCCATTGCGGTTTTGTTTCACCGTTGTTCTCTTGAAGCGCTTAGGGCTTTGGAGTGA 498 49.6 MERVRRMVSERPVVIFSKSTCCMSHTVMRLLSGFGVNPAVHEVDQIARGREIEQALSMLGFSPTVPAVFIGGQLVGGTNEIMTLHLNRSLIPMLTAAGAFLVYLVLHMAQLSDLLVPAYASLQGFIVLLIDFFFLLDYFRVFLSLSASIAVLFHRCSLEALRALE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9396123 9398263 + CmaCh06G014770.1 Cma06g01477 297031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01477 165 Pfam Glutaredoxin 13 75 IPR002109 -
Cma06g01477 165 SUPERFAMILY Thioredoxin-like 1 99 IPR036249 -
Cma06g01477 165 PANTHER GLUTAREDOXIN 1 100 IPR011905 -
Cma06g01477 165 TIGRFAM GlrX-like_plant: glutaredoxin-like family 4 101 IPR011905 -
Cma06g01477 165 Gene3D Glutaredoxin 1 101 - -
Cma06g01477 165 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Cma06g01477 165 CDD GRX_GRXh_1_2_like 12 93 - -
Cma06g01477 165 PANTHER MONOTHIOL GLUTAREDOXIN-S2 1 100 - -
Cma06g01477 165 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Cma06g01477 165 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Cma06g01477 165 PRINTS Glutaredoxin signature 72 85 IPR014025 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01477 K03676 grxC, GLRX, GLRX2; glutaredoxin 3 - csv:101220333 176.792
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01477 Cma08g01211 CCT
Cma06g01477 Cma17g00312 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01477 Cma-Chr6:9396123 Cma17g00312 Cma-Chr17:1670336 6.16E-47 dispersed
Cma17g01120 Cma-Chr17:7840810 Cma06g01477 Cma-Chr6:9396123 3.02E-30 dispersed
Cma06g01476 Cma-Chr6:9388907 Cma06g01477 Cma-Chr6:9396123 1.13E-36 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g347 . . . . . . . . Cmo08g01184 . Cma06g01477 . . . Sed09g0224 Cpe08g00205 . Bhi01g00967 Tan10g0969 Cmetu11g0167 . . . Lcy11g1438 Cla06g00497 Cam06g0534 Cec06g0534 Cco06g0538 Clacu06g0519 Cmu06g0521 Cre06g1291 Cone14ag0776 . . Cone4ag0166 Lsi05g01514 . Chy11g01481 Cme06g00704 . . Bda11g00537 . . Bpe13g00651 . Bma06g01515 Sed07g0377 . . Cma08g01211 Cma17g00312 . . Cpe12g00263 Cpe17g00007 Bhi12g02090 Tan06g0868 Cmetu01g1682 Lac12g2385 Hepe03g0120 . Lcy13g0195 Cla05g00627 Cam05g0687 Cec05g0696 Cco05g0693 Clacu05g0681 Cmu05g0649 Cre05g0720 Lsi09g01408 Csa03g01428 Chy06g00668 Cme11g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002089 2 2 2 3 2 2 0 2 2 2 1 2 4 2 2 3 2 3 5 2 2 2 2 2 2 2 2 3 2 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01477 Cma_Chr06 FPKM 0.0 0.0 2.146275 1.772182 1.427999 0.620735 1.075748 0.416831 0.0 0.0