Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01478 ATGAAAATGTTCGGGTTTCGAAGACGAATGAAGCTCGGAAGATTGAAAGTCCAGCTTTCGGATCCTGCTCAGGGAACTAGGAGTCCTATAAGACACCCCAAACGAGTGACCAGCTCTAATACTGAATGTGCTGCTGCACCTACAAGTAGGCATTCTGAAGAGCATGATGGCCAACGTGCTTCTGACGTTCCTCATACCAGTATTGGTGCTTTGGGACAGTCTGAGAATTGGATGGTCTTGTCAATTGCAGGGGAAAAACCAGCTCCTCGTTTCAATCATGCAGCAACTGTTATTGGTAATAAGATGATTGTTGTTGGTGGCGAATCTGGGAATGGATTATTGGATGATGTACAGGTGCTTAATTTTGATAAATATACCTGGAGCACAGCCTCATCAAAGCTTTACTTATCACCTAGCTCACTGCCATTGAAGATCCCTGCATGCAAGGGTCACAGTCTGGTTTCATGGGGGAAGAAAGCTCTCCTGGTTGGGGGCAAGACAGAGCCAGGAAATGAGAGAATTGCAGTCTGGGCATTTGATACAGAGACAGAATGTTGGTCGCTGATGGAAGCCAAGGGAGATATACCTGTTGCTAGAAGTGGTCACTCTGTAGTTAGAGCTAGCTCTGTCTTAATCCTCTTTGGTGGTGAAGATAGTCGGAGGAGGAAACTCAACGACCTTCACATGTTTGACCTTAAATCGTTTACCTGGCTCCCTCTACATTGCACAGGAACAGGACCATCTGCAAGATCCAACCATGTGGCCGCTCTTTATGATGATAAAACTCTACTTATATTTGGAGGGACATCAAAATCCCGGACCCTGAATGATTTATACTCACTTGACTTTGAGACAATGGTGTGGTCAAGAATAAAGGTACGGGGTTTCCATCCATCACCTAGAGCTGGTTGCTGTGGTGTTCTCTGTGGAACTAGATGGTGCATAGCAGGAGGTGGAAGCAGGAAAAAAAGACATACAGACACTTTAATCTTTGATGTACTGAAACATGAGTGGTCTGTTGCTGTCACGTCTCCTCCATCTTCTGTCACCACCAATAAGGGTTTCAGCTTAGTGCTCGTGCAGCACAAGGAGAAAGATTTACTTCTTCTTGCATTTGGGGGATCCAAAAAGGAGCCATCAAATCAGGTTGAAGTATTGACCATGGAAAAGAAAGAACCATCCTTTAGGCACCGATCCAATCCTATTGACCCGACTGCTAGACAAAATCTAGCATCTGCTATTGGACACGGTTCTGGAAGAAAATCCATCTCAGAGTTCGCACTTATTGATCCAAGTCCTGTTCCTGGAAATATTTCACTGCGCAAGCAATTTCATAATGATGAAGCCTTTGACAAAACTACTAAGATAACCAAGACTCCAGAAGATGATTCCTCTACTTCTCAGGCAACAGAAAACAAGATAACTCAATCTGGAAGTGAATTCCACGGGGAGACACTACCTTCTGTATACGAATATGACAGTTCAAATCCCTTCAAGGAGGGAGTTGGATATCATCCCATGGATAGCACTGATCTATTCAGCGACAACAGTGGCAAAGTAGTAACATCATCCACTTTTTCGAGCATATATCAGTTCTATGAAGCGAAAATGGCGGCATTGATAAGAAAGAACGGAGTTCTCGAAGGGCAAGTAGCAGCAGCCATGGCAAGTCGAGAAGCTGTGGAGAAGAATTTATCCTCTGTTCTAAAGATCAGGCAGGAGATGGAGAAAAGAATAGCTGATATGATAAAGGAGATGGAAATGCTGAGAGATAAGCTAGCAGGAGTAGAAATAGCAAAAGAAGAGGCCGACAGCCTGTCAAACATCGTCCACTCTGACAATGTCCGCCTTGAACATGATGTTGCTTTCCTCAAAGCAGTTTTGGATGACACCCAGAAGGAGCTTCATTCTACTAGAGGAGTCCTTGCTGGAGAAAGGGCCAGGGCTTTCCAACTTCAGGTTGAAGTATTTCATCTAAAGCAAAGATTGCAGTCCATGGAGAACCGAGCACCGACGCCGAGGAAACCGTTCCATATGTAG 2040 44.66 MKMFGFRRRMKLGRLKVQLSDPAQGTRSPIRHPKRVTSSNTECAAAPTSRHSEEHDGQRASDVPHTSIGALGQSENWMVLSIAGEKPAPRFNHAATVIGNKMIVVGGESGNGLLDDVQVLNFDKYTWSTASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLVGGKTEPGNERIAVWAFDTETECWSLMEAKGDIPVARSGHSVVRASSVLILFGGEDSRRRKLNDLHMFDLKSFTWLPLHCTGTGPSARSNHVAALYDDKTLLIFGGTSKSRTLNDLYSLDFETMVWSRIKVRGFHPSPRAGCCGVLCGTRWCIAGGGSRKKRHTDTLIFDVLKHEWSVAVTSPPSSVTTNKGFSLVLVQHKEKDLLLLAFGGSKKEPSNQVEVLTMEKKEPSFRHRSNPIDPTARQNLASAIGHGSGRKSISEFALIDPSPVPGNISLRKQFHNDEAFDKTTKITKTPEDDSSTSQATENKITQSGSEFHGETLPSVYEYDSSNPFKEGVGYHPMDSTDLFSDNSGKVVTSSTFSSIYQFYEAKMAALIRKNGVLEGQVAAAMASREAVEKNLSSVLKIRQEMEKRIADMIKEMEMLRDKLAGVEIAKEEADSLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSMENRAPTPRKPFHM 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9398301 9404340 + CmaCh06G014780.1 Cma06g01478 297032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01478 679 Pfam Galactose oxidase, central domain 211 253 - -
Cma06g01478 679 Coils Coil 558 599 - -
Cma06g01478 679 Gene3D - 55 192 IPR015915 GO:0005515
Cma06g01478 679 MobiDBLite consensus disorder prediction 16 67 - -
Cma06g01478 679 Coils Coil 614 634 - -
Cma06g01478 679 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 3 678 - -
Cma06g01478 679 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 3 678 - -
Cma06g01478 679 Pfam Kelch motif 89 132 IPR006652 GO:0005515
Cma06g01478 679 Gene3D - 193 496 IPR015915 GO:0005515
Cma06g01478 679 MobiDBLite consensus disorder prediction 460 481 - -
Cma06g01478 679 MobiDBLite consensus disorder prediction 21 47 - -
Cma06g01478 679 MobiDBLite consensus disorder prediction 449 481 - -
Cma06g01478 679 SUPERFAMILY Kelch motif 75 341 IPR015915 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01478 - - - bhj:120076871 1251.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01478 Cma14g01635 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01478 Cma-Chr6:9398301 Cma12g01066 Cma-Chr12:8423305 8.28E-06 dispersed
Cma11g00053 Cma-Chr11:263458 Cma06g01478 Cma-Chr6:9398301 2.63E-20 transposed
Cma14g01635 Cma-Chr14:12243362 Cma06g01478 Cma-Chr6:9398301 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g346 . . . . . Bpe14g01142 . . . . Cma06g01478 Cma14g01635 Car06g01272 Car14g01462 Sed02g1213 Cpe08g00204 Cpe03g01377 Bhi01g00968 Tan10g0971 Cmetu06g2006 . Hepe05g1470 . Lcy11g1437 . . . . . . . . . Cone7ag0168 Cone4ag0165 Lsi05g01515 . . Cme06g00705 Blo02g00587 . . Bda13g00168 . . . . . Cmo06g01475 Cmo14g01674 . . . . . . . . . . . . . Cla05g00628 Cam05g0688 Cec05g0697 Cco05g0694 Clacu05g0682 Cmu05g0650 Cre05g0721 . Csa03g01429 Chy06g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007218 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01478 Cma_Chr06 FPKM 1.258422 1.700569 0.416228 0.467618 19.296457 19.817627 20.709578 1.970068 1.758332 2.255523