Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01481 ATGGCCGCCATTTCAATTTGCTTTGCTCCGCAAGCTCTTGCACGGCCCAGAATTCGAAACCCTAGAAGAATACAGTCGCCCAAGAAGCTTCGAGGGAACGACAAGCTTGATCGTAATAGCGTTAAGATAAGAACCAATTCGAAGGAGTTATCTTCCATTGGCGTTGAAGCCACTACCTACACCCGCCTCCCTCCCAGGGAAGACTTCGCTCTTCTTAGCTTTGATTCCCCGTCTTTTGATTCTTCTTCTTCTTCTTCTTCTTCGAAGGTTTCGTCCGAGGTGAAGCTTTTGGATTCGGATGTTGCGATAATTGAGGAGGAAAATGATTTGGATTCTTTGAACTTCGAAGAGAGGGAGGAAAAAGAGGAAGGAGGATTGGATGGGAATTTGGCTTTTGGGAATGGCTATGGGAAGTTTGAAGTGTTTGAGGGGGAATATGACTCTGAAATGGAGGAGTATGGCGATGATAGTGAAGTGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGTTAGATGAGGAAGGAGAGAAGGTTTTGGCATTTAGGAAGGGGAGATTTGTTGATACTGATGAAGTGGAAACCTATTATGATGGTGCTTATGAAGCTGGCGAAGAAGATGTGAAGGAAAAGGGGCTGCCAGCAGTAATGCGGTGCTTTGATCGAGCGAAAATCTATGTGAAAGCTGGAGATGGTGGCAATGGCGTTGTGGCATTTCGGCGCGAGAAGTATGTGCCGCTGGGTGGCCCTTCAGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTTGATGCGTCGATGAATTCGCTATTGCCATTTCGAAATGGTATACATTTTCGTGCAGGAAGGGGTAGTCATGGGCAGGGGAGAATGCAAAACGGGGCGAAGGGTGAGGATGTGGTGGTGAAAGTGGCCCCTGGAACAGTGATAAGAGACGCATTTAGCCAGGAGATTCTGTTGGAATTGTTACATCCGGGGCAGCGGGCTCTGTTGCTGCGCGGTGGAAGAGGTGGAAGAGGCAATGCATCATTCAAATCCGGGTCAAATAAGGTTCCGAAGATTTCAGAGAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTAAAGCTTGTTGCAGACGTTGGAATCGTCGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCACAGCCAGCCATAGCAAATTACCCTTTTACTACCCTACTCCCAAACTTGGGTGTTGTTTCTTTTGACTATGACTCAACTATGGTGGTAGCAGATCTTCCAGGATTACTTGAAGGCGCACACGAGGGGTTTGGCTTAGGCCATGAGTTTCTACGTCACACTGAAAGGTGTTCTTCACTGGTGCATGTGGTCGATGGGTCAGGACCACAACCTGAATATGAATTTGATGCTGTTCGTTTGGAGTTGGAGCTCTTTAGCCCCGAACTAGCTGAAAAACCCTATCTTGTTGCCTATAATAAAATGGATCTTCCTGAAGCTTACGAAAACTGGCCAGCATTCAAGGAAAAGCTACAAGCTCGTGGGATTGAAACTTTTTGTATGAGTGCCGTAAAAAGAGAGGGCACTCATGAAGTCATTAGTGCTGCATATCAGCTACTAAGGGAAACTAAAGAAGCCAGGGAATTTCAAGGTGGGAAAATACCAGAGAATCTGGACCATGTGGCAGATAGAATACACAAGCAACGTAGTGCTTCTATTGATGACTTTGAAATTGTTCGTGATAGCGGTTCCTGGCATGTAGTTGGATCTGGTTTACAACGATTTGTTCAGATGACAAATTGGCGTTACATGGAGTCCGAAAGAAGGTTCCAACATGTCATGGAGGCATGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCATCAAGGAGGGTGACACAGTATTTGTTGCAGAGATGGAGATGATCTGGCATGATTCACCCAATAGCTCTGGTCCATCTAATATGAAGAAAAGATCAGATTCTCTTGATGCTGATAACGGAAGGATGAATTTTCTCTATGGATCAGATGAACAGCCTTACACATCCAGGAGATCCGAATGGAGCAGCATTATTTTATGA 2094 46.08 MAAISICFAPQALARPRIRNPRRIQSPKKLRGNDKLDRNSVKIRTNSKELSSIGVEATTYTRLPPREDFALLSFDSPSFDSSSSSSSSKVSSEVKLLDSDVAIIEEENDLDSLNFEEREEKEEGGLDGNLAFGNGYGKFEVFEGEYDSEMEEYGDDSEVEEEEEEEEEEEEEELDEEGEKVLAFRKGRFVDTDEVETYYDGAYEAGEEDVKEKGLPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPLGGPSGGDGGRGGNVYVEVDASMNSLLPFRNGIHFRAGRGSHGQGRMQNGAKGEDVVVKVAPGTVIRDAFSQEILLELLHPGQRALLLRGGRGGRGNASFKSGSNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSSLVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIETFCMSAVKREGTHEVISAAYQLLRETKEAREFQGGKIPENLDHVADRIHKQRSASIDDFEIVRDSGSWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGIKEGDTVFVAEMEMIWHDSPNSSGPSNMKKRSDSLDADNGRMNFLYGSDEQPYTSRRSEWSSIIL 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9411576 9418848 + CmaCh06G014810.1 Cma06g01481 297035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01481 697 Pfam Domain of unknown function (DUF1967) 581 648 IPR015349 GO:0000166
Cma06g01481 697 SUPERFAMILY Obg GTP-binding protein C-terminal domain 580 650 IPR036346 -
Cma06g01481 697 SUPERFAMILY Obg GTP-binding protein N-terminal domain 222 376 IPR036726 -
Cma06g01481 697 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 157 623 IPR045086 GO:0003924|GO:0005525
Cma06g01481 697 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 157 623 - -
Cma06g01481 697 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 581 648 IPR015349 GO:0000166
Cma06g01481 697 Coils Coil 103 123 - -
Cma06g01481 697 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 222 545 IPR014100 GO:0000287|GO:0003924|GO:0005525
Cma06g01481 697 Hamap GTPase Obg [obg]. 220 546 IPR014100 GO:0000287|GO:0003924|GO:0005525
Cma06g01481 697 Pfam 50S ribosome-binding GTPase 379 499 IPR006073 GO:0005525
Cma06g01481 697 Gene3D GTP1/OBG domain 217 376 IPR036726 -
Cma06g01481 697 MobiDBLite consensus disorder prediction 75 92 - -
Cma06g01481 697 Gene3D - 581 651 IPR036346 -
Cma06g01481 697 CDD Obg 378 545 IPR031167 GO:0005525
Cma06g01481 697 ProSiteProfiles Obg C-terminal (OCT) domain profile. 573 650 IPR015349 GO:0000166
Cma06g01481 697 MobiDBLite consensus disorder prediction 147 177 - -
Cma06g01481 697 ProSiteProfiles Obg domain profile. 219 377 IPR006169 -
Cma06g01481 697 Pfam GTP1/OBG 223 376 IPR006169 -
Cma06g01481 697 MobiDBLite consensus disorder prediction 18 40 - -
Cma06g01481 697 Gene3D - 377 556 IPR027417 -
Cma06g01481 697 Coils Coil 150 180 - -
Cma06g01481 697 MobiDBLite consensus disorder prediction 73 92 - -
Cma06g01481 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 548 IPR027417 -
Cma06g01481 697 ProSitePatterns GTP1/OBG family signature. 431 444 IPR006074 GO:0005525
Cma06g01481 697 MobiDBLite consensus disorder prediction 147 178 - -
Cma06g01481 697 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 378 546 IPR031167 GO:0005525
Cma06g01481 697 PRINTS GTP1/OBG GTP-binding protein family signature 429 444 IPR006073 GO:0005525
Cma06g01481 697 PRINTS GTP1/OBG GTP-binding protein family signature 380 400 IPR006073 GO:0005525
Cma06g01481 697 PRINTS GTP1/OBG GTP-binding protein family signature 446 464 IPR006073 GO:0005525
Cma06g01481 697 PRINTS GTP1/OBG GTP-binding protein family signature 401 419 IPR006073 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01481 - - - cmax:111472313 1216.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00043 Cma-Chr1:154327 Cma06g01481 Cma-Chr6:9411576 1.42E-12 dispersed
Cma01g00601 Cma-Chr1:3155690 Cma06g01481 Cma-Chr6:9411576 2.25E-08 dispersed
Cma06g01481 Cma-Chr6:9411576 Cma13g00490 Cma-Chr13:5248843 2.73E-12 dispersed
Cma06g01481 Cma-Chr6:9411576 Cma09g00127 Cma-Chr9:551126 3.18E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01481 Cma_Chr06 FPKM 1.758023 1.88856 7.470814 7.406286 21.10059 19.777525 19.841526 10.666241 11.45511 10.500787