Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01483 ATGAAAACACAAAGCGCTTCTAGAGAGAGAAAACAGGAAGAAGAAGCTCAAACAGAGATACTACGATCCCCATGTGATCGGAACCTCCATTCTTCCAGCAACAATTCAATATTCTGTTCTTCACTCATTACTGCGCAATCAGTCACTAATCCATCACTTTTCAGTCATTCAACCAGCGGAGGCCGTACGATGAAGCCGTACGGTCAGTCTATGGAAGGCTCTCAGTCCGATCCGTCGCCTGAATGGACTGCGTCGGGACCTGATACAGGTCATGGAGAGCCGGTTTGGCCGTTGGGATCGAGGGAACGGGAATCGTACCCCGAAAGGCCTGAAGAGGCCGATTGTATATACTATCTACGTACCGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAGCGCGGTTTTGGGAGGTTCGAGACCTGGTGGAAGAGACTATCCCGAACGAGTAGGGCAGCCTTTGTGCCAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAATGGGTTCTCTCAGCCGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAATGGGTTCTCTCAGCCCTGTGTCTTTGAATTTCTATGGCTATCCACTTCGGCAGGGGGAAAAGGAATGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCTGAACCGGCTGGTTTGCAGTTTCCAGCACCATCACCCGTTCAGGTTGCACCACTGCCAGCTCCAATGCCTCCTGCACCGTCTGTTTACCCGCCCGTGCAGTCTCCATCTGCACATTCGTCACAACAGTATGGAGTAATACTAGCAAGGTCTCCAATGCTGTCAAGCCCTTATGTTCCCAGCCCTTATGGTCCTATGTTGGTCTCCCCAGGGGTTGTACAATTCCCAAGTTGGAATCCTTACCAAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCAACTTTATGGTATGGCACAAGTTTCGCCTTCTGCACCTGCCTATGCTGGATCTTACCAGCCAATGCCATCTGCTGGTGCGTCAAGTACTAGCCAGAAGGAGCACTCGTTTCCAGAAAGACCTGGGCAGCCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGCTAATTCGAGATCAAGTGTTGTTCTTAGCCAAATAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCATGCAAATTTGACCACTCGATGGAACGACTTAGCTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCTTACCCTGTGGGATCGGTAGTCGGTACTTTAGCCCCATCATTTTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGACCCAGAATGGATTCTAACCCTTCAAGAATGTCTTCATCAACGAGCACCTCTAGTGGATTGGCTGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAATGTTCAACGATCTTCTCAAAGTTCAGGCCTGTCAGCGAGCAGTACCTCCAGCCCCACCAGTGTGGAGGGACAAGTGACCCCATTTGCAAAAGTCAAGGACAACAGGCCTACACATGCCAACAAAAAGCTTCAATCAGTCGAACCCCCAAAGCCAAGCAGCAAAATAGACCATACAAATGACAAATAA 1794 48.83 MKTQSASRERKQEEEAQTEILRSPCDRNLHSSSNNSIFCSSLITAQSVTNPSLFSHSTSGGRTMKPYGQSMEGSQSDPSPEWTASGPDTGHGEPVWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVLGGSRPGGRDYPERVGQPLCQECANLVLPVSITILSRKWVLSAGMCKFGASCKYHHPQQEMGSLSPVSLNFYGYPLRQGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVAPLPAPMPPAPSVYPPVQSPSAHSSQQYGVILARSPMLSSPYVPSPYGPMLVSPGVVQFPSWNPYQAPMSPVASPSAQPSVGSGQLYGMAQVSPSAPAYAGSYQPMPSAGASSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELANSRSSVVLSQIGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSFSSSELRPEHFSGPRMDSNPSRMSSSTSTSSGLAGSTTSRTEMHSHSNVQRSSQSSGLSASSTSSPTSVEGQVTPFAKVKDNRPTHANKKLQSVEPPKPSSKIDHTNDK 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9429815 9436573 - CmaCh06G014830.1 Cma06g01483 297037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01483 597 Gene3D - 381 469 - -
Cma06g01483 597 Gene3D - 173 251 - -
Cma06g01483 597 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 73 543 - -
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Cma06g01483 597 PANTHER PROTEIN PHOSPHATASE RELATED 73 543 - -
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 109 137 IPR000571 GO:0046872
Cma06g01483 597 MobiDBLite consensus disorder prediction 505 560 - -
Cma06g01483 597 SUPERFAMILY CCCH zinc finger 220 246 IPR036855 GO:0046872
Cma06g01483 597 Pfam RNA-binding, Nab2-type zinc finger 185 198 - -
Cma06g01483 597 SMART c3hfinal6 109 136 IPR000571 GO:0046872
Cma06g01483 597 SMART c3hfinal6 429 456 IPR000571 GO:0046872
Cma06g01483 597 SMART c3hfinal6 177 199 IPR000571 GO:0046872
Cma06g01483 597 SMART c3hfinal6 218 245 IPR000571 GO:0046872
Cma06g01483 597 SMART c3hfinal6 383 410 IPR000571 GO:0046872
Cma06g01483 597 SUPERFAMILY CCCH zinc finger 387 410 IPR036855 GO:0046872
Cma06g01483 597 SUPERFAMILY CCCH zinc finger 433 460 IPR036855 GO:0046872
Cma06g01483 597 MobiDBLite consensus disorder prediction 51 107 - -
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 429 457 IPR000571 GO:0046872
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 383 411 IPR000571 GO:0046872
Cma06g01483 597 SUPERFAMILY CCCH zinc finger 111 137 IPR036855 GO:0046872
Cma06g01483 597 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 385 410 IPR000571 GO:0046872
Cma06g01483 597 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 112 136 IPR000571 GO:0046872
Cma06g01483 597 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 432 456 IPR000571 GO:0046872
Cma06g01483 597 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 220 245 IPR000571 GO:0046872
Cma06g01483 597 MobiDBLite consensus disorder prediction 1 31 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 1 21 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 365 380 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 51 83 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 489 597 - -
Cma06g01483 597 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872
Cma06g01483 597 Gene3D - 100 167 - -
Cma06g01483 597 MobiDBLite consensus disorder prediction 360 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01483 - - - mcha:111009281 788.104
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01483 Cma14g01634 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01483 Cma-Chr6:9429815 Cma10g00830 Cma-Chr10:3873704 4.64E-86 dispersed
Cma14g01634 Cma-Chr14:12230592 Cma06g01483 Cma-Chr6:9429815 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g338 . Blo12g00022 . . . . . . . . Cma06g01483 Cma14g01634 Car06g01276 Car14g01459 Sed02g1209 Cpe08g00200 Cpe03g01375 Bhi01g00972 Tan10g0977 Cmetu06g2468 . Hepe05g1466 . Lcy11g1433 . . . . . . . Cone14ag0775 Cone15ag0782 . . Lsi05g01521 . . Cme06g00709 . Blo07g00181 . . . Bpe13g00654 . Bma06g01512 . Cmo06g01479 Cmo14g01672 . . . . . . . . . . . . . Cla05g00632 Cam05g0692 Cec05g0702 Cco05g0698 Clacu05g0686 Cmu05g0654 Cre05g0725 . Csa03g01433 Chy06g00673 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003136 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 1 4 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35278 PF00642 zf-CCCH 1.70E-07 CL0537 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01483 Cma_Chr06 FPKM 3.328408 3.535752 3.62393 3.080866 8.326362 8.456064 8.608769 2.793292 2.505369 2.4938
Cma06g01483 Cma_Chr00 FPKM 3.091271 2.993083 3.407719 2.979994 7.1685 6.409445 7.256817 2.710944 2.539127 2.634476