Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01485 ATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGCGGCTTTCTTCTGCTAATGAGGCCTCTTCAAGCAAATATGTGGAAGCTCCTAGCAAAGGCAAGCAGAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCTCAATGGAGCAGAGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACCGAAATGGTCGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCTGTTGTTGGGTTAATTGCAATGATGACTGATCATTACAGCGTACTGAGAGACAGTGAAAGTGAGCAAGAAAGTAATGAGGATTCGGGAGCAACAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAATAACAACTCAAAGGGATTGGATGCACATTCTTCACAATCACAGTCACTTCCAACAAACTATGGCTGCCTGTCATTGTTGAAGAAAAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACTCCGCGCGTCCCTGTATCATATTCATACGATAAAGATAGTAGAGAGAGGATTTTTTCACCTTCCAGGCATACTAGTAAGCTAAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACGGAGGCTTCGCAACGCGATGGTTCTCCTCAACTTTCACAAACACCAAATCCAAAAATAGAAGGTCATGTACTTTCACCTATCCGAAATGACAGGATGCGAAGTGAATCAGACATGATGAGTACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAATGCAGACTATGATCAGGGGAAAAATACTCGTGAGATTCAAAGGAAGGGTAAAAGGTACTACGGAAAGAAGGCAGAAGTTGAAGAAAGTATGTATAATCACTTGGATGACATCAAGGAAGCTTGTAGTGGGACTGAAGAGGGGCAAAAGTCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTTGATGTAAAATCTGTGAGAACCTCTTTTAAAGGCCCAAGGAAGAGAAGTAAGAAAGCTCTATTTGGAGATGAATGCTCGGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTTTGATGATGCCAGACACTACTGCTGACACTGAGCCTTCTGCAAAGGTTAAAGAAGAAAATCTTGATGTCATGGACAAGTCTAAAATGAAAGGTAATCATTCAGTTGTGGGAGCTGGAATCTCTGCTTCCAAGACATCTAAGACGGGAAAGGCTTCAGGCAACAATGTTGGTCCTATTCCTGAAGGAGAAGGAATTCAAGGATCCAATAATGGAAATCGTAAAAGGAAACAGAAGTCCTCTCCATTTAAAATTTCATCTAAAGATGAAGATAGCAATGATTCTCGTGTCAATGACACTCCAAAAACCAAGGCTACAGATGATGGAAAGAGTTCTTTTGGTAAAGTTAAACGGTCCCCTCATAATGCTGGACTGGCAAAATCTAGCAAAATATCAAAACCTCTAGATCATCATTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAACACAAGTTCCATCAATTAACCCAATCAGCTTGCCTACCAAAATGAGGAGCAGGCGGAAGATGGACCTGCTGAAGTCGCAAAGAGATTCAAAGATTGCTGATAACATTTTGATTGATCAACTTAATGTAACTGCTCATTCATTAGATGATAGACCACATGATCTCAAGGAGCAGCATTCTAATTGCCTATCTTGGCATAAATTGCGTAGATGGTGTGTTTTTGAGTGGCTCTACAGTGCAATTGATTTCCCATGGTTTGCAAAATGTGAGTTTGTAGAGTACTTAAATCACGTTGGATTAGGTCACATTCCTAGATTGACACGTGTTGAATGGGGTGTTATTCGAAGTTCCCTTGGGAGACCGCGGAGATTCTCTGCACAGTTCTTGAAGGAAGAAAAACACAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACCGATTTAGCTCGGCCATTATCTGTTGGACAGCGTGTTATTGCCATTCATCCAAAAACAAGAGAGATCCACGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGGGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGCGTGACTCTTGATAAGATATTTGGTAATCTCAATGAGGTTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATAAAATCAACCAGTAACGATAAACTTGAAAGCACTGATGGTTCTGTGTTTATTTCCCCTTCCACTCATCATATCAACAAATTAATTAAACAGGCAAAGGTCGACCTTGGGTGCTCTAATCTACGAACTAAATTTGGGCTTAATGAGACTGTCGGTATCCAACAGGAGGCAAGTTCCCAACTTTCTGTCCTTGCTCAAATTCAAGCTAAAGAAGCTGATGTTCATGCTCTGTCTGAATTGTCACGTGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTGCTATTACAGTTGAATGAAGTTAATGAACAGGTCTCCTCTGCTCTGTATAGCTTGAGGCAGCGCAATACGTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATTTGGGTGACCCTTGCTCTCATGCTCAAGAACCCGGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCGAACAATGATCGATGAAGCAATGCAGGCAATTCTTTCTCTGAAAAAAAGAGAAAGTAATTTGGAGAACATTGAAGAAGCCATTGATTTTGTGAGTAATAAACTCTCAGTAGATGATTTGGCCTTGCCAACTGTGAAATCAACATCAGCAGATACTAGTAACGCCACTCCAGTATCTCAGAATCATTTCAATGCGGGTGCATCAAACCCATCAGCTGCTAATTATGTAGTTGGTTCCAAGTCCAATAGCCCATCCGACAAGCCTGAAGTGGAGATCCCTTCAGAACTTATTGCGCACTGTGTAGCTACTTTACTCATGATTCAGAAATGCACAGAACGACAGTTTCCGCCAGCTGATGTTGCTCAGGTACTGGATTCTGCTGTCAATAGTTTGCAGCCATGTTGTCCTCAGAACCTTCCACTATATGCAGAAATACAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTTATACCTACATAG 3483 41.77 MAPSRKSRSVNKRLSSANEASSSKYVEAPSKGKQKKRKFADLLGPQWSRDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNEDSGATRKPQKRLRGKSRNNNSKGLDAHSSQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSRERIFSPSRHTSKLKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIRNDRMRSESDMMSTKFRCSEMDEGGCELSLGSTGADNADYDQGKNTREIQRKGKRYYGKKAEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDFDVKSVRTSFKGPRKRSKKALFGDECSAFDALQTLADLSLMMPDTTADTEPSAKVKEENLDVMDKSKMKGNHSVVGAGISASKTSKTGKASGNNVGPIPEGEGIQGSNNGNRKRKQKSSPFKISSKDEDSNDSRVNDTPKTKATDDGKSSFGKVKRSPHNAGLAKSSKISKPLDHHSSSSTDHKREDGDYALSTTQVPSINPISLPTKMRSRRKMDLLKSQRDSKIADNILIDQLNVTAHSLDDRPHDLKEQHSNCLSWHKLRRWCVFEWLYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKHKLNQYRESVRKHYAELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVTLDKIFGNLNEVKINGLLKEAKIEDYIKSTSNDKLESTDGSVFISPSTHHINKLIKQAKVDLGCSNLRTKFGLNETVGIQQEASSQLSVLAQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQVSSALYSLRQRNTYQGTSPLMFLKPVHDLGDPCSHAQEPGSHVAEIVGSSRAKARTMIDEAMQAILSLKKRESNLENIEEAIDFVSNKLSVDDLALPTVKSTSADTSNATPVSQNHFNAGASNPSAANYVVGSKSNSPSDKPEVEIPSELIAHCVATLLMIQKCTERQFPPADVAQVLDSAVNSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9446426 9458475 + CmaCh06G014850.1 Cma06g01485 297039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01485 1160 Pfam DIRP 627 728 IPR033471 -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 400 550 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 526 547 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 1 37 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 116 162 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 145 162 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 477 510 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 1 28 - -
Cma06g01485 1160 SMART DIRP_2 628 729 IPR033471 -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 434 449 - -
Cma06g01485 1160 Gene3D - 2 99 - -
Cma06g01485 1160 CDD SANT 47 81 IPR001005 -
Cma06g01485 1160 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 81 IPR017930 -
Cma06g01485 1160 SMART sant 43 91 IPR001005 -
Cma06g01485 1160 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1160 IPR028306 -
Cma06g01485 1160 Coils Coil 886 909 - -
Cma06g01485 1160 Coils Coil 1002 1032 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 235 254 - -
Cma06g01485 1160 Coils Coil 680 700 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 407 425 - -
Cma06g01485 1160 MobiDBLite consensus disorder prediction 235 251 - -
Cma06g01485 1160 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Cma06g01485 1160 Pfam Myb-like DNA-binding domain 46 81 IPR001005 -
Cma06g01485 1160 PANTHER LIN-9 1 1160 IPR010561 GO:0006351|GO:0017053
Cma06g01485 1160 MobiDBLite consensus disorder prediction 116 134 - -
Cma06g01485 1160 SUPERFAMILY Homeodomain-like 42 89 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01485 - - - bhj:120080265 2071.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01485 Cma14g01632 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01069 Cma-Chr12:8446255 Cma06g01485 Cma-Chr6:9446426 1.51E-21 transposed
Cma14g01632 Cma-Chr14:12206350 Cma06g01485 Cma-Chr6:9446426 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35280 PF06584 DIRP 4.20E-29 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01485 Cma_Chr06 FPKM 26.674892 29.118305 26.415405 26.298456 21.752432 24.335901 23.914457 30.71542 28.075325 27.984188