Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01493 ATGAGGCCTCTAGACGAGAAGGAGACCACTGCCGTGTTCGAAAAGCTACACAAATTCACCGGAAACAACCTCAAGAACATCGTCGAGAATCCCGCTCACGAAGGCCCCGAACAAAATCCCGGCCGCTACTGCTTCCGCCTCCACAAAAACAAGGTCTATTACGTCAGCGATTCTCTTGTCAAGCGAGCCACCAACGTAGCCCGTAACAATCTCGTGGCTCTCGGCACATGCATTGGCAAGTTCACTCATGGCGGCAGTTTTCATCTCACCGTTCACTCGCTAGGTCTCTTGTCCGCCAATGCCAGACACAAGGTTTGGCTTAAACCTACCTCTGAGATGTCTTTTTTGTATGGGAACCATGTTTTGAAAGGAGGCTTAGGGCGGATTACTGAAAATATTGCTCCTGGTGATGGAGTCGTTGTGTATTCTATGTCGGACATACCTTTGGGATTCGGAATTGCGGCGAAGTCCACTCAGGATTGTAGGAAGTTGGACCCTAATGGGATTGTGGTTCTTCATCAGTCGGATATTGGAGAGTATTTGAGGATGGAGGATGAGCTTTGA 564 49.11 MRPLDEKETTAVFEKLHKFTGNNLKNIVENPAHEGPEQNPGRYCFRLHKNKVYYVSDSLVKRATNVARNNLVALGTCIGKFTHGGSFHLTVHSLGLLSANARHKVWLKPTSEMSFLYGNHVLKGGLGRITENIAPGDGVVVYSMSDIPLGFGIAAKSTQDCRKLDPNGIVVLHQSDIGEYLRMEDEL 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9492811 9493374 + CmaCh06G014930.1 Cma06g01493 297047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01493 187 Pfam UPF0113 Pre-PUA domain 2 90 IPR040598 -
Cma06g01493 187 PANTHER 60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG 1 187 - -
Cma06g01493 187 PIRSF NIP7 1 187 IPR016686 GO:0005634|GO:0042255
Cma06g01493 187 Pfam UPF0113 PUA domain 104 182 IPR005155 -
Cma06g01493 187 Gene3D PUA domain 102 187 IPR036974 GO:0003723
Cma06g01493 187 SUPERFAMILY PUA domain-like 103 178 IPR015947 -
Cma06g01493 187 SMART pua_5 103 178 IPR002478 GO:0003723
Cma06g01493 187 ProSiteProfiles PUA domain profile. 102 178 - -
Cma06g01493 187 Gene3D - 1 101 - -
Cma06g01493 187 SUPERFAMILY Pre-PUA domain 1 101 - -
Cma06g01493 187 Coils Coil 185 187 - -
Cma06g01493 187 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01493 K07565 NIP7; 60S ribosome subunit biogenesis protein NIP7 - csv:101222851 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01625 Cma-Chr14:12182737 Cma06g01493 Cma-Chr6:9492811 1.12E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g315 . . Bda03g01200 . Bpe04g01131 . Bma04g01108 . . . Cma06g01493 . Car06g01284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01489 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007729 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01493 Cma_Chr06 FPKM 22.423759 15.612343 19.264784 19.653513 31.87397 23.740686 26.160791 21.794641 23.377394 20.660143