Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01497 ATGCTTCAAGAAGCTTCAACAAAAGCCGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGGTAACATAGATGGAATTGAGGTTTCCGACAAATTCGAGATCCAGCCTGGACTTCGAAGGATCAGCAGTTTCTCTTGCTTATCTGGGGCTGCTTTGAGTGCAAATGCAACCTTAGCTAACACAAATATATGCAATGGGTTGATAGGAGTAGAAATACTTCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTGCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTGTCAAACTTAAGTTGCAGTCCATCTACCCCAACATCTGAATATGATTCATGCTTGTTAAAGTCCACGAGTGCTCCTTCCGGAAGTGAAGGTTTTCTTAATGTTAAGGAATTGCAAGTGGCAGGTGGAGCTGCTGGTGAGGACAGGGTCCAAGCTGTTTGTTCCGAAGAAAATGGATGGCTGTTTTGTGCAATTTATGACGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGGACATTGTATGAAACCATCGTGTTTTATTTTAGCCTACTAGATTGGGGAGCTAAGAGTGAAACCTCGGATATTTTGGACATGGATAATTCACATCTCGATGATTGTAGCATTACTCAGAGAAGTTTTTCTACTTTGAGAAACAATAGTAAAAGTGCTTCAGATATCAACAATATATTTGAGAAACGTTCACATGCCAAAGCAGGAATGGCAAACTATCCTCTAAGGCATGGGGTGCTAGATAGCCTCCAGCGTGCTCTTAGTCAAACAGAGAATGATTTTTTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTAGTTTCTGTTGGATCTTGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTATATACATTAAATTTGGGTGATAGTAGAGCAGTACTGGCTACTCTTGATGAAGGTGCAATGAGAGGGAATAGGGGACTGAAAGCTGTCCAGCTCACTGAGAGTCACACTGTGGATAATGCACTCGAAAGAGCGAAGTTACAATATGATCATCCTGATGATCCCACAATCATTGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGAAAAAGTTTAATGATGCTTTGATGGGTATTCTTCGAGTTCGTAACCTAATAAGCCCTCCCTATATTTCTACTCAACCGGCATTGTCTGTCCATAGGATATCAAAATCAGATTGCTTTGTAATAGTTGGCAGTGATGGTTTATTTGACTTTTTTGGCAATGACGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGTGATCCTGCAAAATATTTACTGGAGCAGCTCTTATTGAAAGCTGCTAATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGAAGAAGAAGGAAATATCACGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCATGTAA 1560 41.22 MLQEASTKAEGELEVSFGYKCNGNIDGIEVSDKFEIQPGLRRISSFSCLSGAALSANATLANTNICNGLIGVEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSCLLKSTSAPSGSEGFLNVKELQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFYFSLLDWGAKSETSDILDMDNSHLDDCSITQRSFSTLRNNSKSASDINNIFEKRSHAKAGMANYPLRHGVLDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGAMRGNRGLKAVQLTESHTVDNALERAKLQYDHPDDPTIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSVHRISKSDCFVIVGSDGLFDFFGNDEAVNLVHSYILSNPTGDPAKYLLEQLLLKAANCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSM 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9510194 9514985 - CmaCh06G014970.1 Cma06g01497 297051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01497 519 Pfam Protein phosphatase 2C 238 456 IPR001932 -
Cma06g01497 519 Gene3D - 118 515 IPR036457 -
Cma06g01497 519 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 3 518 - -
Cma06g01497 519 SUPERFAMILY PP2C-like 152 507 IPR036457 -
Cma06g01497 519 SMART PP2C_4 132 504 IPR001932 -
Cma06g01497 519 ProSiteProfiles PPM-type phosphatase domain profile. 138 506 IPR001932 -
Cma06g01497 519 PANTHER PROTEIN PHOSPHATASE 2C 3 518 IPR015655 GO:0004722|GO:0006470
Cma06g01497 519 CDD PP2Cc 151 506 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01497 Cma-Chr6:9510194 Cma20g00405 Cma-Chr20:1941128 1.54E-78 dispersed
Cma14g01621 Cma-Chr14:12163289 Cma06g01497 Cma-Chr6:9510194 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01497 - - csv:101202885 894.419