Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01504 ATGGAGATCTGGAACATATTTGTGATTTCTATCGATTTTGCTTTAGCTCGTAGTGATCTGATTTATGAGATAGGTTTGGTGTACATGGATTCGTTCCCTTCATTGGTGACAAAGCAATTGTTTTTAATTTTGATTTCAGGTGACGAGCTTCTCTCGGATTCGTTCCCATACAAGGAACTCGAGAATGGAATGATCTGGGAAGTTGAGGGAAAGTGGGTCGTTCAAGGAGCGGTCGATGTGGACATTGGTGCAAATCCTTCTGCTGAAGGTGATGGTGAGGATGAAGGGGTTGATGATCAAGCTGTGAAGGTGGTTGACATTGTCGACACCTTCAGGCTTCAGGAGCAACCTACCATGGACAAGAAGCAATTCATTGCATATATTAAGAAGTTTATCAAATTGCTGACACCTAAGCTGGAAGGAGAGAAACAGGAGGCATTTAAGAAGAACATTGAAGGAGCAACTAAGTTTCTGCTTCCAAAGCTCAAGGACTTCCAGTTCTTCGTGGGAGAGAGCATGCATGACGATTCCTGTATCGTGTTTGCATACTACAGGGAAGGAGCCACTGACCCAACATTTTTATACCTTGCGCCAGCTTTGAAGGAAGTCAAGTGCTGA 618 43.69 MEIWNIFVISIDFALARSDLIYEIGLVYMDSFPSLVTKQLFLILISGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDIVDTFRLQEQPTMDKKQFIAYIKKFIKLLTPKLEGEKQEAFKKNIEGATKFLLPKLKDFQFFVGESMHDDSCIVFAYYREGATDPTFLYLAPALKEVKC 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9549000 9551026 - CmaCh06G015040.1 Cma06g01504 297058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01504 205 ProSitePatterns Translationally controlled tumor protein (TCTP) domain signature 2. 162 184 IPR018103 -
Cma06g01504 205 PANTHER TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOG 43 205 - -
Cma06g01504 205 ProSiteProfiles Translationally controlled tumor protein (TCTP) domain profile. 34 205 IPR034737 -
Cma06g01504 205 Pfam Translationally controlled tumour protein 42 201 IPR018105 -
Cma06g01504 205 Gene3D Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 40 205 IPR011323 -
Cma06g01504 205 PRINTS Translationally controlled tumour protein signature 38 58 IPR018105 -
Cma06g01504 205 PRINTS Translationally controlled tumour protein signature 97 116 IPR018105 -
Cma06g01504 205 PRINTS Translationally controlled tumour protein signature 83 94 IPR018105 -
Cma06g01504 205 PANTHER TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED 43 205 IPR018105 -
Cma06g01504 205 SUPERFAMILY Mss4-like 44 205 IPR011057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01504 - - - vvi:100254426 279.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01200 Cma-Chr11:7133953 Cma06g01504 Cma-Chr6:9549000 1.39E-89 transposed
Cma14g01617 Cma-Chr14:12137869 Cma06g01504 Cma-Chr6:9549000 2.80E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g292 . . . Bda08g00292 . Bpe14g01126 . Bma05g01034 . . Cma06g01504 . Car06g01295 Car14g01440 Sed02g1177 Cpe08g00180 Cpe03g01358 Bhi01g01023 Tan10g1015 Cmetu02g1668 . Hepe05g1441 . Lcy11g1410 . . . . . . . Cone14ag0760 Cone15ag0769 . . Lsi05g01545 . . Cme06g00738 Blo02g00503 Blo07g00170 Bda11g00522 Bda13g00189 Bpe05g00835 Bpe13g00668 . Bma06g01497 . Cmo06g01502 Cmo14g01654 . . . . . . . . . . . . . Cla05g00658 Cam05g0720 Cec05g0730 Cco05g0729 Clacu05g0714 Cmu05g0679 Cre05g0753 . Csa03g01473 Chy06g00710 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001678 4 2 2 4 3 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 1 2 4 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01504 Cma_Chr06 FPKM 679.736633 729.637817 2271.925781 2183.841064 999.838196 961.365356 1030.738159 3510.529541 4023.502441 3660.729492
Cma06g01504 Cma_Chr00 FPKM 1085.935669 1126.148682 1334.918823 1430.392334 568.221008 653.651001 601.821716 2382.532715 2580.980713 2523.770508