Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01517 ATGCATGAAGATAATCAATTTGGTCGTTGTGGTCGGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCTCTCTTATCTCTTCCTTCTCCGAGCTCCGGTTATGGAAGAAGGAACCGAAAAGAAAGTATCAGCAACAGTCTGATTTTATTAGTAACCATGACTATGCATAGGACTATTAAGGATTTAGTGCAAAATTCAGACACTCTTTCAGTTAACGAGACGCGGAGAAACATGGCATATGATGGCGGTGGAGGCAAGATCGTGAATAAGGTTGCTGCCCTGGTTGGGTTGTCATCTCTGTTAGTAGTTGCGATGCTTAATGGTGTCAATGGCGCGGAAGATCACTCTGAGAGCTCTAGCACCATTAAGACTCTTTGTGAACCCACTGATTATCGCCAGACTTGCGAGGAAGCCTTGGTGAAGTCCAAAACTGACTCACAAGACCCACGTGAGCTAATCAAGGCAGGATTCCATTACGTAGTTGAGCAGATCAAATCCGCCATTAAAAATTCCACAACCCTGAAAGAAACTGCCAATGACCCCATGGCCAAGAAGGCGCTTGACGATTGCAGCGAACTCATGGATTACGCCATTGACGATCTTCTATTATCCTTTGATAAAATCACTGAAACTTTTGATTTTAGTAAAATGGATGATTACATTGAGGATCTTAGGATTTGGTTGAGTGGTGCATTGACGTATCAGGTAACTTGCTTGGATGGGTTTGAGAATGTAACGGGAGATACCGGTGAGAAGATGAAGCACTTGTTGAAGTTGTCACAAGAAATGACCGCCAATGCACTTGAGATGGTGGGTGAAGTTAAATCTGTTGTGAGCTCCTTGTGGGAAGGGTTGGGGCTGCCACCATTGGGACGAGAACTACGAACAGCGGAATCCAAGGAAGAGGAGGAACTGCCATCTTGGGTCAACGACAGACGGGGGCTACTCCAAGCCAAAGGAGCCAATGTCAAGGCGGATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTCAAGCCCTTCAAGATGTCCCAAAGAAAAGCAATAAGACCTTTGTCATTTATATCAAGGAAGGAGTTTATGAAGAGCAAGTAATGGTCGACAAAAAGATGACCTATGTCATGATGATCGGAGATGGCCCGACTAAGACCAAGATCACTGCTAGAGAAAACTTTGTTGATGGAACATCTACATTCAAAACTGCTACCGTTTCGGTGATTGGAACCAACTTCATCGGAAAAGACTTGTGGTTCGAGAACTCAGCTGGGGCTGCAAAGCATCAAGCTGTTGCACTCCGAGTTCAATCTGACATGTCAATCTTCTATAACTGTCGAATGGACGGCTATCAAGATACTCTATACACTCATGCCCACCGTCAGTTCTATCGAGACTGCACCATCACTGGCACCATCGACTTCATTTTTGGCAACGCCGCCGTCGTGTTCCAAAATTGTAAGATCTTCGTGAGGAAGCCATTGGAAAATCAAAAATGCATTGTCACAGCCCAAGGCCGAACCCAAAAGAAAGAGCCCACTGCTATTATCCTCCAGAACTGCGTCATCTCTTCCGACCCCGACTACTTCCCTGTCCGCCATATCAACAAGGCCTATCTTGGTCGTCCATGGAAAGCATATTCAAGAACTATCATCATGGAATCTCAAATTGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGATGGGAAATTTTGCTCTCAACACTCTATTTTACTCGGAGTTCAATAATAGGGGACCTGGTGCATCAACGAAAGATCGAGTCAAGTGGAAGGGAATTAAACAGATCACAGCGAAGCATGCCCTTGATTTTACTCCTGCATTGTTTATTCGTGGTAATCCCTGGATTAAGCCCACCGGAGTTCCATATAGTTCAGGCATGATGAAACCCTAA 1926 45.07 MHEDNQFGRCGRTLLWISDHILHRALLSLPSPSSGYGRRNRKESISNSLILLVTMTMHRTIKDLVQNSDTLSVNETRRNMAYDGGGGKIVNKVAALVGLSSLLVVAMLNGVNGAEDHSESSSTIKTLCEPTDYRQTCEEALVKSKTDSQDPRELIKAGFHYVVEQIKSAIKNSTTLKETANDPMAKKALDDCSELMDYAIDDLLLSFDKITETFDFSKMDDYIEDLRIWLSGALTYQVTCLDGFENVTGDTGEKMKHLLKLSQEMTANALEMVGEVKSVVSSLWEGLGLPPLGRELRTAESKEEEELPSWVNDRRGLLQAKGANVKADVVVAKDGSGKYKTITQALQDVPKKSNKTFVIYIKEGVYEEQVMVDKKMTYVMMIGDGPTKTKITARENFVDGTSTFKTATVSVIGTNFIGKDLWFENSAGAAKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPLENQKCIVTAQGRTQKKEPTAIILQNCVISSDPDYFPVRHINKAYLGRPWKAYSRTIIMESQIDDLIQPEGWLPWMGNFALNTLFYSEFNNRGPGASTKDRVKWKGIKQITAKHALDFTPALFIRGNPWIKPTGVPYSSGMMKP 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9589741 9594284 - CmaCh06G015170.1 Cma06g01517 297071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01517 641 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 122 274 IPR035513 -
Cma06g01517 641 SMART PMEI_2 119 272 IPR006501 GO:0004857
Cma06g01517 641 Gene3D - 322 638 IPR012334 -
Cma06g01517 641 PANTHER PECTINESTERASE 96 639 - -
Cma06g01517 641 PANTHER PECTINESTERASE 96 639 - -
Cma06g01517 641 CDD PMEI-like_3 126 273 - -
Cma06g01517 641 ProSitePatterns Pectinesterase signature 2. 472 481 IPR033131 -
Cma06g01517 641 Pfam Plant invertase/pectin methylesterase inhibitor 123 271 IPR006501 GO:0004857
Cma06g01517 641 SUPERFAMILY Pectin lyase-like 325 637 IPR011050 -
Cma06g01517 641 Gene3D Invertase/pectin methylesterase inhibitor family protein 118 277 IPR035513 -
Cma06g01517 641 Pfam Pectinesterase 328 624 IPR000070 GO:0030599|GO:0042545
Cma06g01517 641 TIGRFAM PME_inhib: pectinesterase inhibitor domain 100 270 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01517 Cma-Chr6:9589741 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01520 Cma-Chr6:9602662 Cma06g01517 Cma-Chr6:9589741 1.65E-90 dispersed
Cma06g01536 Cma-Chr6:9656130 Cma06g01517 Cma-Chr6:9589741 1.66E-36 dispersed
Cma06g01517 Cma-Chr6:9589741 Cma06g01518 Cma-Chr6:9594721 0 tandem
Cma02g00578 Cma-Chr2:3338992 Cma06g01517 Cma-Chr6:9589741 4.36E-29 transposed
Cma05g00882 Cma-Chr5:6414722 Cma06g01517 Cma-Chr6:9589741 4.40E-19 transposed
Cma08g00449 Cma-Chr8:2527124 Cma06g01517 Cma-Chr6:9589741 0 transposed
Cma14g01610 Cma-Chr14:12094439 Cma06g01517 Cma-Chr6:9589741 3.16E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01517 K01051 - csv:101212686 839.721