Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01518 ATGGCATATGATGGCGGTGGATGCAAGATCAATAAGGTTGCTGCCCTCGTTGGGTTGTTATCTCTGTTTGTAGTTGCGATGGTTAATGGTGTCCATGGCGCAGAAGAGCACTCTGAGAGCTCTAGCGCCATTAAGACTCTTTGTGAACCCACTGATTATCGCAAGACTTGCGAGGAAGCCTTGGTGAAGTCCAAAACCGACTCACAAGACCCACGTGAGCTAATCAAGGCAGGATTCCATTATGTAGTTGAGCAGATCAAATCCGCCATTAAAAATTCCACAACCCTGAAAGAAACTGCCAATGACCCCATGGCCAAGAAGGCGCTTGACGATTGCAGCGAACTCATGGATTACGCCATTGACGATCTTCTATTGTCCTTTGATAAAATCACTGAGACTTTTGATTTTAGTAAAATGGATGATTACATTGAAGATCTTAGGATTTGGTTGAGTGGTGCATTGACGTATCAGGTAACTTGCTTGGATGGGTTTGAGAATGTAACGGGAGATACTGGTGAGAAGATGAAGCACTTGTTGAAGTTGTCACAAGAAATGACCGCCAATGCACTTGAGATGGTGGGTGAAGTTAAATCCGTTGTGAGCTCCTTGTGGGAAGGCTTGGGGCTGCCACCATTGGGACGAGAACTACGAACAGCGGAATCCAAGGAAGAGGAGGAACTGCCATCTTGGGTCAACGACAGACGGGGGCTACTCCAAGCCAAAGGAGCCAATGTCAAGGCGGATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTCAAGCCCTTCAAGATGTCCCAAAGAAAAGCAATAAGACCTTTGTCATTTATATCAAGGAAGGAGTTTATGAAGAGCAAGTAATGGTCGACAAAAAGATGACCTATGTCATGATGATTGGAGATGGCCCGACTAAGACCAAGATCACTGCTAGAGAAAACTTTGTTGATGGAACATCTACATTCAAAACTGCTACCGTTTCGGTGATTGGAACCAACTTCATCGGAAAAGACTTGTGGTTCGAGAACTCGGCTGGGGCTGCAAAGCATCAAGCTGTTGCACTCCGAGTTCAATCTGACATGTCAATCTTCTATAACTGTCGAATGGACGGCTATCAAGATACTCTATACACTCATGCCCACCGTCAGTTCTATCGAGACTGCACCATCACTGGCACCATCGACTTCATTTTTGGCAACGCTGCCGTCGTGTTCCAAAATTGTAAGATCTTCGTGAGGAAGCCATTGGATAATCAAAAATGCATTGTCACAGCCCAAGGCCGAACCCAAAAGAAAGAGCCCACTGCTATTATCCTCCAGAACTGCGTCATCTCTTCCGACCCCGACTACTTCCCTGTCCGCCATATCAACAAGGCCTATCTTGGTCGTCCATGGAAAGCATATTCAAGAACTATCATCATGGAATCTCAAATTGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGATGGGAAATTTTGCTCTCAACACTCTATTTTACTCGGAGTTCAATAATAGGGGACCTGGTGCATCAACGAAAGATCGAGTCAAGTGGAAGGGAATTAAACAGATCACAGCGAAGCATGCCCTTGATTTTACTCCTGCATTGTTTATTCGTGGTAATCCTTGGATTAAGCCCACCGGAGTTCCATATACTTCAGGCATGATGAACGCCTAA 1686 45.61 MAYDGGGCKINKVAALVGLLSLFVVAMVNGVHGAEEHSESSSAIKTLCEPTDYRKTCEEALVKSKTDSQDPRELIKAGFHYVVEQIKSAIKNSTTLKETANDPMAKKALDDCSELMDYAIDDLLLSFDKITETFDFSKMDDYIEDLRIWLSGALTYQVTCLDGFENVTGDTGEKMKHLLKLSQEMTANALEMVGEVKSVVSSLWEGLGLPPLGRELRTAESKEEEELPSWVNDRRGLLQAKGANVKADVVVAKDGSGKYKTITQALQDVPKKSNKTFVIYIKEGVYEEQVMVDKKMTYVMMIGDGPTKTKITARENFVDGTSTFKTATVSVIGTNFIGKDLWFENSAGAAKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPLDNQKCIVTAQGRTQKKEPTAIILQNCVISSDPDYFPVRHINKAYLGRPWKAYSRTIIMESQIDDLIQPEGWLPWMGNFALNTLFYSEFNNRGPGASTKDRVKWKGIKQITAKHALDFTPALFIRGNPWIKPTGVPYTSGMMNA 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9594721 9596580 - CmaCh06G015180.1 Cma06g01518 297072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01518 561 CDD PMEI-like_3 46 193 - -
Cma06g01518 561 Pfam Pectinesterase 248 544 IPR000070 GO:0030599|GO:0042545
Cma06g01518 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 190 IPR006501 GO:0004857
Cma06g01518 561 Pfam Plant invertase/pectin methylesterase inhibitor 43 191 IPR006501 GO:0004857
Cma06g01518 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 197 IPR035513 -
Cma06g01518 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Cma06g01518 561 Gene3D - 242 558 IPR012334 -
Cma06g01518 561 SUPERFAMILY Pectin lyase-like 245 557 IPR011050 -
Cma06g01518 561 PANTHER PECTINESTERASE 19 559 - -
Cma06g01518 561 PANTHER PECTINESTERASE 19 559 - -
Cma06g01518 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 194 IPR035513 -
Cma06g01518 561 SMART PMEI_2 39 192 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g01518 Cma08g01239 CCT
Cma06g01518 Cma17g00341 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01518 Cma-Chr6:9594721 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma14g01610 Cma-Chr14:12094439 Cma06g01518 Cma-Chr6:9594721 3.80E-23 dispersed
Cma17g00341 Cma-Chr17:1855462 Cma06g01518 Cma-Chr6:9594721 0 dispersed
Cma06g01517 Cma-Chr6:9589741 Cma06g01518 Cma-Chr6:9594721 0 tandem
Cma06g01518 Cma-Chr6:9594721 Cma06g01519 Cma-Chr6:9601235 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01518 K01051 - csv:101212686 851.277