Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01519 ATGGATGATTACATTGAAGATCTTAGGATTTGGTTGAGTGGTGCATTGACGTATCAGGTAACTTGCTTGGATGGGTTTGAGAATGTAACGGGAGATACCGGTGAGAAGATGAAGCACTTGTTGAAGTTGTCACAAGAAATGACCGCCAATGCACTTGAGATGGTGGGTGAAGTTAAATCCGTTGTGAGCTCCTTGTGGGAAGGGTTGGGGCTGCCACCCTTGGGACGAGAACTACGAACAGCGGAATCCAAGGAAGAGGAGGAAGTGCCATCTTGGGTCAACGACAGACGGGGGCTACTCCAAGCCAAAGGAGCCAATGTCAAGGCGGATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTCAAGCCCTTCAAGATGTCCCAAAGAAAAGTAATAAGACCTTTGTCATTTATATCAAGGAAGGAGTTTATGAAGAGCAAGTAATGGTCGACAAAAAGATGACCTATGTCATGATGATCGGAGATGGCCCGACTAAGACCAAGATCACTGCTAGAGAAAACTTTGTTGATGGAACATCTACATTCAAAACTGCTACCGTTTCGGTGATTGGAACCAACTTCATCGGAAAAGATTTGTGGTTCGAGAACTCAGCTGGCCCTGCAAAGCACCAAGCTGTTGCACTACGAGTTCAATCCGACATGTCAATTTTCTATAACTGTCGAATGGACGGCTATCAAGATACTCTCTACACTCATGCCCACCGTCAGTTCTATCGAGACTGCACCATCACTGGCACCATCGACTTCATTTTTGGCAACGCCGCCGTCGTGTTCCAAAATTGTAAGATCTTCGTGAGGAAGCCATTGGAAAATCAAAAATGCATTGTCACAGCCCAAGGCCGAACCCAAAAGAAAGAGCCCACTGCTATTATCCTCCAGAACTGCGTCATCTCTTCCGACCCCGACTACTTCCCTGTCCGCCATATCAACAAGGCCTATCTTGGTCGTCCATGGAAAGCATATTCAAGAACTATCATCATGGAATCTCAAATTGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGATGGGAAATTTTGCTCTCAACACTCTATTTTACTCGGAGTTCAATAATAGGGGACCTGGTGCATCAACGAAAGATCGAGTCAAGTGGAAGGGAATTAAACAGATCACAGCGAAGCATGCCCTTGATTTTACTCCTGCATTATTTATTCGTGGTAATCCCTGGATTAAGCCCACCGGAGTTCCATATAGTTCAGGCATGATGAACCCCTAG 1272 45.91 MDDYIEDLRIWLSGALTYQVTCLDGFENVTGDTGEKMKHLLKLSQEMTANALEMVGEVKSVVSSLWEGLGLPPLGRELRTAESKEEEEVPSWVNDRRGLLQAKGANVKADVVVAKDGSGKYKTITQALQDVPKKSNKTFVIYIKEGVYEEQVMVDKKMTYVMMIGDGPTKTKITARENFVDGTSTFKTATVSVIGTNFIGKDLWFENSAGPAKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNAAVVFQNCKIFVRKPLENQKCIVTAQGRTQKKEPTAIILQNCVISSDPDYFPVRHINKAYLGRPWKAYSRTIIMESQIDDLIQPEGWLPWMGNFALNTLFYSEFNNRGPGASTKDRVKWKGIKQITAKHALDFTPALFIRGNPWIKPTGVPYSSGMMNP 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9601235 9602609 - CmaCh06G015190.1 Cma06g01519 297073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01519 423 Pfam Pectinesterase 110 406 IPR000070 GO:0030599|GO:0042545
Cma06g01519 423 CDD PMEI-like_3 1 55 - -
Cma06g01519 423 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 59 IPR035513 -
Cma06g01519 423 PANTHER PECTINESTERASE 3 421 - -
Cma06g01519 423 ProSitePatterns Pectinesterase signature 2. 254 263 IPR033131 -
Cma06g01519 423 SUPERFAMILY Pectin lyase-like 107 419 IPR011050 -
Cma06g01519 423 PANTHER PECTINESTERASE 3 421 - -
Cma06g01519 423 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 6 56 IPR035513 -
Cma06g01519 423 Gene3D - 104 420 IPR012334 -
Cma06g01519 423 Pfam Plant invertase/pectin methylesterase inhibitor 3 53 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01519 Cma-Chr6:9601235 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01518 Cma-Chr6:9594721 Cma06g01519 Cma-Chr6:9601235 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01519 K01051 - csv:101212686 700.279