Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01521 ATGGCGTATGATGGCAATAAGGCTGCCCTGGTTGGGTTGTTGTCTCTGTTTTTGGTTGCCTTGGTTAATGGTGTAAATGGCGCGGGAGAGGACCATGGCTCCTCTAATGCTGCCATTAAGACTCTATGTGAGCCCACTACTTACCGTGAAACTTGTGAAGAAGCCCTGGTAAAGTCTAATGTTGACTCAAAGGACCCACGTGAGTTAATCAAGGCAGGATTCCATTTTGCCATTGAGCAACTCAAAGTGGCCCTGCAAAATTCCCCCACTGTGAGAGCAGCCGCTACTGACCCCATGGCGCAAAAAGCAGTTGATACTTGCGACGAGTTAATGGATTATGCAATTGATGATCTTTTAGTTACGTTTGATAAAATGGCTAATAGTTTTAGTGTACACCAAATAAATAATTATCTTGGGAACATTAGGATTTGGTTGAGCGGTGCATTGACATATCAAGAAACTTGTTTGGATGGTTTTGAGAATGTTTCTGGCGATACGGGTGAAAAGATGAAGAATTTGTTGAAGACATCAAAAGAAATGACCGCCAATGGGCTTGTGATGGTGGGTGAGATTACATCTCTTGTGAGCTCTTTGTGGCAGGCGCTAGGACTTTCAAAGGGGCGACAACTCCAAACAGAAGAATCCAGTGAAGAATTCCAAGACGAAGAGCCATCTTGGGTCAATGACAGGCGAGGGCTACTCGAAGCCACTGGAGCTAACATCAAGGCGGATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTGAAGCCCTTCAAGAGGTCCCAAAGAAGAGCAATACAACCTTTGTGATTTATGTGAAGGAAGGAGTTTATGAAGAGCAAGTGATGGTGGACAAAACAATGACCTATGTCATGATGATTGGAGACGGCCCGACTAAGACCAAGATCACAGCTAGCAAGAATGTCGTTGATGGAACACCCACATTTAAAAGTGCTACCTTTGCGGCGGTCGGAACCAACTTCATCGGAAAAGACTTGTGGTTCGAGAACTCAGCTGGACCTGAGAAACACCAAGCTGTGGCACTTCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAGGATACTCTCTACACCCATGCACATCGTCAATTCTTTCGAGATTGCACCATCACTGGTACCGTTGATTTCATCTTTGGCAATGCTGCTGTTGTGTTACAGAACTGTAAGATATTCGTGAGGAAGCCAATGAAGGGTCAAACATGCCTTGTCACCGCCCAAGGCCGAACCCAGAGAAAAGAACCCACCGGCATTATCCTCCAAAACTGCCAAATCTCTTCCGACCCTGACTACTACCCTGTTCGCCATACCATTAAGTCCTTCCTTGGTCGCCCATGGAAGCAGTATTCTAGAACTGTGGTGATGCAATGCCAAATCGACGATTTGATCCAGCCTGAAGGGTGGCTTGCATGGGAGGGCACTTTTGCTCTCAAGACTTTGTTTTATGCAGAGTTCGATAACAGAGGACCTGGTGCAGCAACACAAAATCGGGTGACGTGGAGGGGAATTAAACAAATTACAGCGGACCACGCCGTTAAATTTGCCCCTGCATTGTTTATTGGTGGTAATCGGTGGGTCAAACAGACCGGAATTCCGTACAGTGGTGGGTTGATGACAATCTAA 1674 45.94 MAYDGNKAALVGLLSLFLVALVNGVNGAGEDHGSSNAAIKTLCEPTTYRETCEEALVKSNVDSKDPRELIKAGFHFAIEQLKVALQNSPTVRAAATDPMAQKAVDTCDELMDYAIDDLLVTFDKMANSFSVHQINNYLGNIRIWLSGALTYQETCLDGFENVSGDTGEKMKNLLKTSKEMTANGLVMVGEITSLVSSLWQALGLSKGRQLQTEESSEEFQDEEPSWVNDRRGLLEATGANIKADVVVAKDGSGKYKTITEALQEVPKKSNTTFVIYVKEGVYEEQVMVDKTMTYVMMIGDGPTKTKITASKNVVDGTPTFKSATFAAVGTNFIGKDLWFENSAGPEKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFFRDCTITGTVDFIFGNAAVVLQNCKIFVRKPMKGQTCLVTAQGRTQRKEPTGIILQNCQISSDPDYYPVRHTIKSFLGRPWKQYSRTVVMQCQIDDLIQPEGWLAWEGTFALKTLFYAEFDNRGPGAATQNRVTWRGIKQITADHAVKFAPALFIGGNRWVKQTGIPYSGGLMTI 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9604438 9606193 + CmaCh06G015210.1 Cma06g01521 297075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01521 557 SMART PMEI_2 34 187 IPR006501 GO:0004857
Cma06g01521 557 PANTHER PECTINESTERASE 28 554 - -
Cma06g01521 557 Gene3D - 238 554 IPR012334 -
Cma06g01521 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 191 IPR035513 -
Cma06g01521 557 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Cma06g01521 557 TIGRFAM PME_inhib: pectinesterase inhibitor domain 16 188 IPR006501 GO:0004857
Cma06g01521 557 Pfam Plant invertase/pectin methylesterase inhibitor 38 185 IPR006501 GO:0004857
Cma06g01521 557 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cma06g01521 557 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
Cma06g01521 557 PANTHER PECTINESTERASE 28 554 - -
Cma06g01521 557 CDD PMEI-like_3 41 193 - -
Cma06g01521 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 191 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01521 Cma-Chr6:9604438 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01537 Cma-Chr6:9656441 Cma06g01521 Cma-Chr6:9604438 4.38E-118 dispersed
Cma06g01538 Cma-Chr6:9657268 Cma06g01521 Cma-Chr6:9604438 7.63E-43 dispersed
Cma06g01521 Cma-Chr6:9604438 Cma06g01524 Cma-Chr6:9608818 1.05E-59 proximal
Cma06g01520 Cma-Chr6:9602662 Cma06g01521 Cma-Chr6:9604438 3.74E-56 tandem
Cma06g01521 Cma-Chr6:9604438 Cma06g01522 Cma-Chr6:9607091 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01521 K01051 - csv:101212686 765.377