Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01522 ATGAATGATTATCTTGAAAATCTTAGGATTTGGTTGAGCGCTGCATTGACATATCAAGAAACTTGTTTGGATGGTTTCGAGAATGTTCCTGGCGATACTGGTGAAAAGATGAAGAATTTGTTGAAGACGTCAAAAGAAATGACCGCCAATGGGCTTGTGATGGTGGGTGAGGTTACATCCCTTGTGAGCACTTTGTGGCAGAAGTTGGGACTGCCGCCACAAACGGGGCGGCAACTTCGAACAGAGCATTCCAATGAAGAAAAGGAAGAGCCATCTTGGGTGAGCGACAGACGAGGGCTACTCGAGGCCACTGGAGCTAACATCAAAGCGAATGTGGTGGTGGCTAAAGATGGAAGTGGAAAGTACAAGACAATAACTGAAGCCCTTAAAGAGGTACCATTGAAGAGCAATACAACCTTTGTGATTTATGTGAAGGAAGGAGTTTATGAAGAGCAAGTGATGGTGGACAAAAAAATGACCTATGTCATGGTGATTGGAGACGGCCCGACTAAGACCAAGATCACAGCTAGCAAGAATGTCGTTGATGGAACACCCACATTCAAAAGTGCTACCTTTGCGGCGATCGGATCCAATTTCATTGGAAAAGACTTGTGGTTCGATAACTCAGCTGGCCTTCACAAAGGCCAGGCCGTGGCACTCCGAGTTCAATCCGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTCTCTACCCCCATGCCAATCGTCAATTCTACCGAGATTGCACAATCTCCGGTACCGTTGATTTCATCTTTGGCAATGCTGCTGCCGTGTTACAAAACTGTAAGATCTTAGTGAGGAAGCCAAAGCCGAATCAAGCATGCTTTGTCACTGCCCAAGGTCGAATGGAGAGTGATGAGCCCACTGGTATCGTCCTCCAAAATTGCACTATCTCTTCCGACCCTGAATTCTACCCCATTCGCCATACCAGTAAGTCCTACCTTGGTCGCCCATGGAAGAAGTATTCAAGAACCGTAATCATGCAATGCCAAATCGATGATTTGATCCATCCTGATGGTTGGATGCGATGGAGTGATGATTCTACTCTCAACACTTTGTATTACACGGAGTTCGATAACAGAGGACCTGGTGCGGCAAAAGAAAATAGAGTTAAGTGGAAGGGAATTAAACAGATCACAGCAACACAGGCCATCAATTTCACCCCTTCGTTGTTTATTCATGGTGATTCTTGGATCAAGAGCAGCGGAATACCGTACACTGGTGGCATGATGAAAATCTAA 1275 45.41 MNDYLENLRIWLSAALTYQETCLDGFENVPGDTGEKMKNLLKTSKEMTANGLVMVGEVTSLVSTLWQKLGLPPQTGRQLRTEHSNEEKEEPSWVSDRRGLLEATGANIKANVVVAKDGSGKYKTITEALKEVPLKSNTTFVIYVKEGVYEEQVMVDKKMTYVMVIGDGPTKTKITASKNVVDGTPTFKSATFAAIGSNFIGKDLWFDNSAGLHKGQAVALRVQSDMSIFYNCRMDGYQDTLYPHANRQFYRDCTISGTVDFIFGNAAAVLQNCKILVRKPKPNQACFVTAQGRMESDEPTGIVLQNCTISSDPEFYPIRHTSKSYLGRPWKKYSRTVIMQCQIDDLIHPDGWMRWSDDSTLNTLYYTEFDNRGPGAAKENRVKWKGIKQITATQAINFTPSLFIHGDSWIKSSGIPYTGGMMKI 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9607091 9608732 - CmaCh06G015220.1 Cma06g01522 297076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01522 424 MobiDBLite consensus disorder prediction 80 96 - -
Cma06g01522 424 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 6 57 IPR035513 -
Cma06g01522 424 CDD PMEI-like_3 1 60 - -
Cma06g01522 424 MobiDBLite consensus disorder prediction 73 96 - -
Cma06g01522 424 PANTHER PECTINESTERASE 4 421 - -
Cma06g01522 424 Pfam Pectinesterase 111 407 IPR000070 GO:0030599|GO:0042545
Cma06g01522 424 PANTHER PECTINESTERASE 4 421 - -
Cma06g01522 424 Pfam Plant invertase/pectin methylesterase inhibitor 5 52 IPR006501 GO:0004857
Cma06g01522 424 ProSitePatterns Pectinesterase signature 2. 255 264 IPR033131 -
Cma06g01522 424 SUPERFAMILY Pectin lyase-like 108 420 IPR011050 -
Cma06g01522 424 Gene3D - 105 421 IPR012334 -
Cma06g01522 424 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 58 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01522 Cma-Chr6:9607091 Cma06g01528 Cma-Chr6:9624522 0 dispersed
Cma06g01534 Cma-Chr6:9654218 Cma06g01522 Cma-Chr6:9607091 1.86E-53 dispersed
Cma06g01535 Cma-Chr6:9654615 Cma06g01522 Cma-Chr6:9607091 1.13E-145 dispersed
Cma06g01521 Cma-Chr6:9604438 Cma06g01522 Cma-Chr6:9607091 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01522 K01051 - csv:101212686 629.017