Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01525 ATGACATTAACCTTTACTTGTTTAGGATTGATAACGAGACCTTTAACCTTACTTGTTATCTCCGAAGCTCCAGCTTGGCAATGGTTCCAAAATGAACTTCATCAGGGCCATCTGCTATTCTCAAGGTTCTTGCAGCAGCCCAGAGATGAGCAAGAACAGTGTCAGAAGATAAGCCACCTGCACCATGAACTTCCATTCCCATGTCCAGAATCTGCAATGCCATATTGGTTGCTGCAACCTGTGCCATCACAACTGACTATCGCTTGGGCCGTTACAAAGATTGGGAGGTGGGCAAAACAGTATATTTCATCAACCAGTGGAGGTAAAGTAGATGGAAATCCCAAAATGTTTGCACTTATTGATTGGCTACGCCTGCATATTCCTTCAGAAGAGTCGTCAGGTGTCACAACTGGCTTAGTTCATGGAGATTTTCGAATAGATAATCTTATATCTCATCCCACTGAGGACCGAGTAATTGGCATTCTTGATTGGGAGCTATCCAGTCTGGGAAATCAAATGTGTGATGTTGCTTATGTCTGTCTGGCTTACATCCTGAACTTTCATTCTGACCGTCCAAATATAGGACAGGGTTTTAACAATATTGGAACTTCAGAAGGGATTCCTTCTTTAGCAGAATATTTGGCTCATTACTGTGTCGTCGGTGTAAGTAGCTATTGTCAACATTGTATAATCAAGTGTTTGCGTTTTACATCAGTCTTGCAAATTTTTTCCTTCTATGAGGGTTTCAAGGATTTGGTTCTCAACATTGGTTCTCAACATCATCTTCTTCAAACTCGATTGTACAAGTTAATTCACAAGATACTAGGAAGGAGAATGAAGGATGGGCCAACAGCTTCAAACTCGATTGTACAAGTTAATTCACAAGATACTAGGAAGGAGAATGAAGGATGGGCCATTCTCAAAGATGAGGGAAAGTTTGTCCCCAGTAAAAAGGTCATGGAGTTGAGAAACAAGTTGATTAAGTTCATGGAAGATCATATATACCCTATGGAAAATGAATTTTTCAAACTTGCTCAATCTTCCAAACGTTGGACCATTCCCCCAGAGGAAGAGAAACTGAAGGAGATGGCTAAGAAAGAAGGCTTGTGGAACTTGTGGATACCTTTTGATGGTGCTGCAAGAGCAAGGAAACTGCTTTTTGATGGAAGTAGCCACATCCTTTCTGCTGGTGCAGACAACCTTCTTCTTGGTGCTGGCCTCTCCAATGTTGAATATGGATATCTATGTGAGATAATGGGTCGGTCTATTTGGGCTCCTCAGGTGTTTAACTGTGGTGCACCTGACACTGGAAATATGGAGGGTAGGCTTGGCCCAGGGAGGCTGCTCCATTGCATGCGATTGGTAGGAGCTGCAGAACGAGGCATACGGATGGCAGTTCAGAGGGCTCTTAGTAGAAGAGTGTTTGGAAAGTTGATCGCTGAGAAGGGTTCCTTCCTTTCAAACAATAGAACGAGATTGCTAGTCTTGGAAGCAGCTGATCAGTTAGATCGGCTAGAAAATAAGAAAGCACATGGGACGATTGCAATGAAACTTGGCACAGCTCCCAATATGGCATTGCATATTCTGGGCATGGCAATGCAAGTTCATGGTGCAGGTGGCTTATCTTCTGACACTGTTCTTGCTCATCTTTGGGCTGCTGCAAGAACCTTAAGAATAGCAGATGGCCCTGATGAAGTTCATTTTGGAACCATCGCCAAGCTGGAGCTTCGGAGAGCTAAGCTTTGA 1746 43.3 MTLTFTCLGLITRPLTLLVISEAPAWQWFQNELHQGHLLFSRFLQQPRDEQEQCQKISHLHHELPFPCPESAMPYWLLQPVPSQLTIAWAVTKIGRWAKQYISSTSGGKVDGNPKMFALIDWLRLHIPSEESSGVTTGLVHGDFRIDNLISHPTEDRVIGILDWELSSLGNQMCDVAYVCLAYILNFHSDRPNIGQGFNNIGTSEGIPSLAEYLAHYCVVGVSSYCQHCIIKCLRFTSVLQIFSFYEGFKDLVLNIGSQHHLLQTRLYKLIHKILGRRMKDGPTASNSIVQVNSQDTRKENEGWAILKDEGKFVPSKKVMELRNKLIKFMEDHIYPMENEFFKLAQSSKRWTIPPEEEKLKEMAKKEGLWNLWIPFDGAARARKLLFDGSSHILSAGADNLLLGAGLSNVEYGYLCEIMGRSIWAPQVFNCGAPDTGNMEGRLGPGRLLHCMRLVGAAERGIRMAVQRALSRRVFGKLIAEKGSFLSNNRTRLLVLEAADQLDRLENKKAHGTIAMKLGTAPNMALHILGMAMQVHGAGGLSSDTVLAHLWAAARTLRIADGPDEVHFGTIAKLELRRAKL 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9610049 9614356 - CmaCh06G015250.1 Cma06g01525 297079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01525 581 PANTHER ACYL-COA DEHYDROGENASE IBR3-RELATED 441 581 - -
Cma06g01525 581 Coils Coil 488 508 - -
Cma06g01525 581 Pfam Phosphotransferase enzyme family 100 182 IPR002575 -
Cma06g01525 581 Pfam Acyl-CoA dehydrogenase, C-terminal domain 441 573 IPR009075 GO:0016627
Cma06g01525 581 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 440 578 IPR036250 GO:0016627
Cma06g01525 581 PANTHER ACYL-COA DEHYDROGENASE IBR3-RELATED 92 440 - -
Cma06g01525 581 Gene3D - 314 441 IPR037069 GO:0016627|GO:0050660
Cma06g01525 581 PANTHER MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED 92 440 - -
Cma06g01525 581 SUPERFAMILY Protein kinase-like (PK-like) 81 218 IPR011009 -
Cma06g01525 581 CDD ACAD10_11_N-like 94 218 IPR041726 -
Cma06g01525 581 Gene3D - 77 249 - -
Cma06g01525 581 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 313 436 IPR009100 GO:0016627
Cma06g01525 581 PANTHER MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED 441 581 - -
Cma06g01525 581 Gene3D - 442 580 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01525 K00249 ACADM, acd; acyl-CoA dehydrogenase [EC:1.3.8.7] - csv:101207559 470.314
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01525 Cma14g01609 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01523 Cma-Chr6:9608800 Cma06g01525 Cma-Chr6:9610049 7.56E-35 proximal
Cma06g01525 Cma-Chr6:9610049 Cma06g01530 Cma-Chr6:9637425 4.06E-39 proximal
Cma14g01609 Cma-Chr14:12087658 Cma06g01525 Cma-Chr6:9610049 1.45E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g152 . . . . . Bpe14g01116 . . . . Cma06g01525 Cma14g01609 . . . . Cpe03g01351 . . . . . . . . . . . . . . . . . . . . . . Blo02g00495 Blo07g00167 Bda11g00518 . . Bpe13g00672 Bma02g00911 Bma06g01492 . . Cmo14g01647 . . . . . . . . . . . . . Cla05g00671 Cam05g0735 Cec05g0743 Cco05g0742 Clacu05g0728 Cmu05g0693 Cre05g0767 . Csa03g01488 Chy06g00725 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016223 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01525 Cma_Chr06 FPKM 0.0 0.0 0.0 0.096445 0.236281 0.491968 0.192349 0.015693 0.0 0.0