Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01528 ATGGCTCCTCTAATGCTGACATTAAGACTCTATCTCAAAGCGGCCATTGCAAATTCCCCCACTTTGAGACAAGCCGCCACCGACCCCCTGGCGCAAAACGCAGTTGATGCTTGCGACGAGCTCATGGATTATGCAATTGATGATCTTTTAACTTCCTTTAATAAAATCACCGATAGTTTTGACGTACACAGAGTGAATGATTATCTTGAGAACCTTAGGATTTGGTTGAGCGCTGCATTGACATATCAACAAACTTGTTTGGATGGTTTCGAGAATGTTCCTGGCGATACTGGTGAAAAGATGAAGAATTTGTTGAAGACGTCAAAAGAAATGACCGCCAATGGGCTTGTGATGGTGGGTGAGGTTACATCCCTTGTGACCACTTTGTGGCAGAAGCTGGGACTGCTACAAACGGGGCGGCAACTTCGAACAGAGCATTCCAATGAAGAAAAGGAAGAGCCATCTTGGGTGAGCGACAGACGAGGGCTACTCGAGGCCACTGGAGCTAACATCAAGGCGAATGTGGTGGTGGCTAAAGACGGGAGTGGAAAGTACAAGACAATAACTGAAGCCCTTAAAGAGGTACCATTGAAGAGCAATACAACCTTTGTGATTTATGTGAAGGAAGGAGTTTATGAAGAGCAAGTGATGGTGGACAAAAAAATGACCTATGTCATGGTGATTGGAGACGGCCCGACTAAGACCAAGATCACAGGTAGCAAGAATGTCGTCGATGGGACAACCACATTCAAAAGTGCTACCTTTGCGGCGGTCGGATCCAACTTCATCGGAAAAGACTTGTGGTTCGATAACTCAGCTGGACTTTACAAAGGCCAGGCCGTGGCACTCCGAGTTCAATCCGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTTTCTACCCCCATGCCAACCGTCAATTCTATCGAGATTGCACAATCTCCGGTACCGTTGATTTCATCTTTGGCAATGCTGCTGTCGTGTTACAGAACTGTAAGATCTTAGTGAGGAAGCCAAAGCCGAAACAACCATGCCCTATCACTGCCCAAGGTCGAATGGAGAGTGATGAGCCCACTGGTATCGTCCTCCAAAATTGCACCATCTCTTCCGACCCTGACTACTACCCCGTTCGCCATACCAGTAAGTCCTACCTTGGTCGCCCATGGAAGCAATATTCAAGGACCGTCGTCATGCAAAGCCAAATCGACGACTTGATCCAGCCTGAAGGTTGGCTTCCATGGAATGGTGATTTTGCTCTCAATACTTTGTATTACACAGAGTTTGACAACAGAGGACCTGGTGCAGCAAAAGAAAATAGAGTTAAGTGGAAGGGAATTAAGCAGATCACCGCAAAAGAGGCCATCAATTTCACCCCTTCGTTGTTTATTCATGGTGATTCTTGGATCAAGAACACCGGAATATCCTACACGGGTGCCTTGATGAAAATCTAA 1464 46.24 MAPLMLTLRLYLKAAIANSPTLRQAATDPLAQNAVDACDELMDYAIDDLLTSFNKITDSFDVHRVNDYLENLRIWLSAALTYQQTCLDGFENVPGDTGEKMKNLLKTSKEMTANGLVMVGEVTSLVTTLWQKLGLLQTGRQLRTEHSNEEKEEPSWVSDRRGLLEATGANIKANVVVAKDGSGKYKTITEALKEVPLKSNTTFVIYVKEGVYEEQVMVDKKMTYVMVIGDGPTKTKITGSKNVVDGTTTFKSATFAAVGSNFIGKDLWFDNSAGLYKGQAVALRVQSDMSIFYNCRMDGYQDTFYPHANRQFYRDCTISGTVDFIFGNAAVVLQNCKILVRKPKPKQPCPITAQGRMESDEPTGIVLQNCTISSDPDYYPVRHTSKSYLGRPWKQYSRTVVMQSQIDDLIQPEGWLPWNGDFALNTLYYTEFDNRGPGAAKENRVKWKGIKQITAKEAINFTPSLFIHGDSWIKNTGISYTGALMKI 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9624522 9626176 - CmaCh06G015280.1 Cma06g01528 297082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01528 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 13 121 IPR035513 -
Cma06g01528 487 SMART PMEI_2 3 118 IPR006501 GO:0004857
Cma06g01528 487 SUPERFAMILY Pectin lyase-like 171 481 IPR011050 -
Cma06g01528 487 TIGRFAM PME_inhib: pectinesterase inhibitor domain 15 119 IPR006501 GO:0004857
Cma06g01528 487 PANTHER PECTINESTERASE 11 483 - -
Cma06g01528 487 Pfam Plant invertase/pectin methylesterase inhibitor 23 116 IPR006501 GO:0004857
Cma06g01528 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 5 122 IPR035513 -
Cma06g01528 487 CDD PMEI-like_3 12 124 - -
Cma06g01528 487 Pfam Pectinesterase 174 470 IPR000070 GO:0030599|GO:0042545
Cma06g01528 487 Gene3D - 168 484 IPR012334 -
Cma06g01528 487 PANTHER PECTINESTERASE 11 483 - -
Cma06g01528 487 ProSitePatterns Pectinesterase signature 2. 318 327 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01522 Cma-Chr6:9607091 Cma06g01528 Cma-Chr6:9624522 0 dispersed
Cma06g01528 Cma-Chr6:9624522 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01527 Cma-Chr6:9618691 Cma06g01528 Cma-Chr6:9624522 3.34E-95 tandem
Cma06g01528 Cma-Chr6:9624522 Cma06g01529 Cma-Chr6:9634771 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01528 K01051 - csv:101212686 702.975