Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01529 ATGGCGTATGACCGCGGTGGATGCAAGGACAATAAGGCTGCCCTGGTTGGGTTGTTGTCTCTGTTTTTGGTTGCCTTGGTTAATGGTGTAAATGGCGCGGGAGAGGACCATGGCTCCTCTAATGCTGACATTAAGACTCTATGTGAGCCCACTACTTACCGTGAAACTTGCGAAAAAGTCCTGGTGAAGTCCAATGTTGACTCAAAAGACCCACGTGAGTTGGTCAAGGCAGGGTTCCATTTTGCTATTGAGCAGCTCAAAGCGGCCATTGCAAATTCCCCCACTTTGAGACAAGCCGCCACCGACCCCCTGGCGCAAAACGCAGTTGATGCTTGCGACGAGCTCATGGATTATGCAATTGATGATCTTTTAACTTCCTTTAATAAAATCACCGATAGTTTTGACGTACACAGAGTGAATGATTATCTTGAGAACCTTAGGATTTGGTTGAGCGCTGCATTGACATATCAACAAACTTGTTTGGATGGTTTCGAGAATGTTCCTGGCGATACTGGTGAAAAGATGAAGAATTTGTTGAAGACGTCAAAAGAAATGACCGCCAATGGGCTTGTGATGGTGGGTGAGGTTACATCCCTTGTGACCACTTTGTGGCAGAAGCTGGGACTGCTACAAACGGGGCGGCAACTTCGAACAGAGCATTCCAATGAAGAAAAGGAAGAGCCATCTTGGGTGAGCGACAGACGAGGGCTACTCGAGGCCACTGGAGCTAACATCAAGGCGAATGTGGTGGTGGCTAAAGACGGGAGTGGAAAGTACAAGACAATAACTGAAGCCCTTAAAGAGGTACCATTGAAGAGCAATACAACCTTTGTGATTTATGTGAAGGAAGGAGTTTATGAAGAGCAAGTGATGGTGGACAAAAAAATGACCTATGTCATGGTGATTGGAGACGGCCCGACTAAGACCAAGATCACAGGTAGCAAGAATGTCGTCGATGGGACAACCACATTCAAAAGTGCTACCTTTGCGGCGGTCGGATCCAACTTCATCGGAAAAGACTTGTGGTTCGATAACTCAGCTGGACTTTACAAAGGCCAGGCCGTGGCACTCCGAGTTCAATCCGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTTTCTACCCCCATGCCAACCGTCAATTCTACCGAGATTGCACAATCTCCGGTACCGTTGATTTCATCTTTGGCAATGCTGCTGTCGTGTTACAGAACTGTAAGATCTTAGTGAGGAAGCCAAAGCCGAAACAACCATGCCCTATCACTGCCCAAGGTCGAATGGAGAGTGATGAGCCCACTGGTATCGTCCTCCAAAATTGCACCATCTCTTCCGACCCTGACTACTACCCCGTTCGCCATACCAGTAAGTCCTACCTTGGTCGCCCATGGAAGCAATATTCAAGGACCGTCGTCATGCAAAGCCAAATCGACGACTTGATCCAGCCTGAAGGTTGGCTTCCATGGAATGGTGATTTTGCTCTCAATACTTTGTATTACACAGAGTTTGACAACAGAGGACCTGGTGCAGCAAAAGAAAATAGAGTTAAGTGGAAGGGAATTAAGCAGATCACCGCAAAAGAGGCCATCAATTTCACCCCTTCGTTGTTTATTCATGGTGATTCTTGGATCAAGAACACCGGAATATCCTACACGGGTGCCTTGATGAAAATCTAA 1686 46.86 MAYDRGGCKDNKAALVGLLSLFLVALVNGVNGAGEDHGSSNADIKTLCEPTTYRETCEKVLVKSNVDSKDPRELVKAGFHFAIEQLKAAIANSPTLRQAATDPLAQNAVDACDELMDYAIDDLLTSFNKITDSFDVHRVNDYLENLRIWLSAALTYQQTCLDGFENVPGDTGEKMKNLLKTSKEMTANGLVMVGEVTSLVTTLWQKLGLLQTGRQLRTEHSNEEKEEPSWVSDRRGLLEATGANIKANVVVAKDGSGKYKTITEALKEVPLKSNTTFVIYVKEGVYEEQVMVDKKMTYVMVIGDGPTKTKITGSKNVVDGTTTFKSATFAAVGSNFIGKDLWFDNSAGLYKGQAVALRVQSDMSIFYNCRMDGYQDTFYPHANRQFYRDCTISGTVDFIFGNAAVVLQNCKILVRKPKPKQPCPITAQGRMESDEPTGIVLQNCTISSDPDYYPVRHTSKSYLGRPWKQYSRTVVMQSQIDDLIQPEGWLPWNGDFALNTLYYTEFDNRGPGAAKENRVKWKGIKQITAKEAINFTPSLFIHGDSWIKNTGISYTGALMKI 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9634771 9636626 - CmaCh06G015290.1 Cma06g01529 297083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01529 561 Pfam Plant invertase/pectin methylesterase inhibitor 44 190 IPR006501 GO:0004857
Cma06g01529 561 PANTHER PECTINESTERASE 28 557 - -
Cma06g01529 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Cma06g01529 561 CDD PMEI-like_3 46 198 - -
Cma06g01529 561 SMART PMEI_2 39 192 IPR006501 GO:0004857
Cma06g01529 561 SUPERFAMILY Pectin lyase-like 245 555 IPR011050 -
Cma06g01529 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 193 IPR006501 GO:0004857
Cma06g01529 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 195 IPR035513 -
Cma06g01529 561 PANTHER PECTINESTERASE 28 557 - -
Cma06g01529 561 Pfam Pectinesterase 248 544 IPR000070 GO:0030599|GO:0042545
Cma06g01529 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 196 IPR035513 -
Cma06g01529 561 Gene3D - 242 558 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01524 Cma-Chr6:9608818 Cma06g01529 Cma-Chr6:9634771 1.42E-68 dispersed
Cma06g01527 Cma-Chr6:9618691 Cma06g01529 Cma-Chr6:9634771 1.21E-94 dispersed
Cma06g01529 Cma-Chr6:9634771 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01539 Cma-Chr6:9657647 Cma06g01529 Cma-Chr6:9634771 6.85E-104 dispersed
Cma06g01528 Cma-Chr6:9624522 Cma06g01529 Cma-Chr6:9634771 0 tandem
Cma17g00341 Cma-Chr17:1855462 Cma06g01529 Cma-Chr6:9634771 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01529 K01051 - csv:101212686 763.837