Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g01533 ATGCTAAGGTTCTTAATATATTTTATTATTTGGTTCAACTTTAAAGAATATGTATGCTTTACCGACTGTAAAGGGGTGAAGACAGGAGAAAGAATCCATCATTTTATTCTTCTTTCAATTCATTCTCTTTTCTTTTACCTCCTTCAATCAGGAAAAGTGAGATCCTTACAAGTTGCCATGACACTATACCGAAGAAACATGGCGTATGACGGCGGTGGATGCAAGAACAATAAAGTTGCCCTGGTTGGGTTGTTGTCTCTGTTTTTGGTTGCCTTGGTTAATGGTGCAAGTGGCGCAGGAGAGGACTCTGGGTCCTCTAATGTTGCCATTAAGACTATATGTGAGCCCACTACTTATCGTGAAACTTGCGAAGAAGCCCTGGTGAAGTCCAATGTTGACTCAAAAGACCCACGTGAGTTGATCAAGGCAGGGTTCCATTTTGCTATTGAGCAGCTCAAAGCGGCAATTGCAAATTCCCCCACTTTGAAACAAGCCGCCACCGACCCCATGGCGAAAGAAGCCATTGATACTTGTGACGAGCTCATAGATTATGCAATTGATGATCTTTTAACTACGTTTGATCAAATCACTGATAGTTTTAGTTTAAATAGGGTGGATAATTATCTTAAGAATCTTAGGATTTGGTTGAGTGGTGCGTTGACATATCAAGAAACTTGTTTGGATGCTTTCGAGAATGTTACTGGCGATACTGGTGAAAAGATGACGAATTTGTTGAAGACGTCAAAAGAAATGACCGCTAATGGACTTGTGATGGTGGGTGAGGTTACATCTCTTGTGAGCTCTTTGTGGAAGGCGCTCGGGCTGCCAGAAACAGGGCGACAACTCCGAGCAAAAGAACTCGATGAAGAAGATGAAGAGGAAGAGCCATCTTGGGTCAATGACAGGCGAGGGCTACTCCAAGCCACTGGTGCCAAGATTAGGGCAAATGTGGTGGTGGCTAAAGACGGAAGTGGAAAGTACAAGACAATAACTCAAGCCCTTCAAGATGTCCCAAGGAAGAGCAATAAAACCTTTGTGATTTATGTCAAGGAAGGAGTTTACCAAGAGCAAGTAATGGTGGACAAAACAATGACCTGGGTCATGATGATTGGAGATGGTCCTACCAAGACCAAGATCACGGCCGGCAAGAACTTCAAGGATGGAACATCCACATTCAAAACTGCTACCTTTGCGGCGGTTGGAACCAACTTCATTGGAAAAGACTTGTGGTTCGAGAACTCTGCTGGGCCTGAGAAACACCAGGCTGTGGCACTCCGAGTTCAATCAGACATGTCAATCTTCTACAATTGTAGAATGGACGGCTATCAAGATACTCTCTACACCCATGCTCATCGTCAATTCTTTCGAGATTGCACCATCACTGGTACCATTGATTTCATCTTTGGCAATGCTGCTGTCATCTTACAAAACTGTAAGATATTTGTGAGGAAGCCAATGGAGAATCAAAAATGCATCGTCACTGCTCAAGGTCGGCTCGAGAGGAAAGAGCCCACTGGTATCGTCCTCCAAAATTGCGCCATCTCTTCTGACCCTGGCTTCTTCCCCGTCCGCCATGTCTTCAAGACCTACCTTGGCCGCCCATGGAAGCAGTATTCAAGAACCATCATCATGCAATGCCAAATTGACGACTTGATCCAACCTGAAGGGTGGCTTCCATGGGAGGGCGATTTTGCTCTCAAGACTTTGTTTTACACAGAATTTGATAACAGAGGACCTGGTGCAGCAAAACAAAATAGAGTTAAGTGGAGGGGAATTAAACAAATCACACCAAAGCATGCCATTGATTTCACCCCTGGGTTGTTTATTCGTGGTAATCCCTGGATTAGGCGCACTGGAGTTCCTTACTATTCGGGCATGGCAACGATCTAA 1890 44.39 MLRFLIYFIIWFNFKEYVCFTDCKGVKTGERIHHFILLSIHSLFFYLLQSGKVRSLQVAMTLYRRNMAYDGGGCKNNKVALVGLLSLFLVALVNGASGAGEDSGSSNVAIKTICEPTTYRETCEEALVKSNVDSKDPRELIKAGFHFAIEQLKAAIANSPTLKQAATDPMAKEAIDTCDELIDYAIDDLLTTFDQITDSFSLNRVDNYLKNLRIWLSGALTYQETCLDAFENVTGDTGEKMTNLLKTSKEMTANGLVMVGEVTSLVSSLWKALGLPETGRQLRAKELDEEDEEEEPSWVNDRRGLLQATGAKIRANVVVAKDGSGKYKTITQALQDVPRKSNKTFVIYVKEGVYQEQVMVDKTMTWVMMIGDGPTKTKITAGKNFKDGTSTFKTATFAAVGTNFIGKDLWFENSAGPEKHQAVALRVQSDMSIFYNCRMDGYQDTLYTHAHRQFFRDCTITGTIDFIFGNAAVILQNCKIFVRKPMENQKCIVTAQGRLERKEPTGIVLQNCAISSDPGFFPVRHVFKTYLGRPWKQYSRTIIMQCQIDDLIQPEGWLPWEGDFALKTLFYTEFDNRGPGAAKQNRVKWRGIKQITPKHAIDFTPGLFIRGNPWIRRTGVPYYSGMATI 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9645268 9648291 - CmaCh06G015330.1 Cma06g01533 297087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g01533 629 ProSitePatterns Pectinesterase signature 2. 460 469 IPR033131 -
Cma06g01533 629 Gene3D - 310 626 IPR012334 -
Cma06g01533 629 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 109 261 IPR035513 -
Cma06g01533 629 Gene3D Invertase/pectin methylesterase inhibitor family protein 105 262 IPR035513 -
Cma06g01533 629 SMART PMEI_2 105 258 IPR006501 GO:0004857
Cma06g01533 629 TIGRFAM PME_inhib: pectinesterase inhibitor domain 84 259 IPR006501 GO:0004857
Cma06g01533 629 CDD PMEI-like_3 112 264 - -
Cma06g01533 629 Pfam Plant invertase/pectin methylesterase inhibitor 109 256 IPR006501 GO:0004857
Cma06g01533 629 Pfam Pectinesterase 316 612 IPR000070 GO:0030599|GO:0042545
Cma06g01533 629 PANTHER PECTINESTERASE 81 627 - -
Cma06g01533 629 PANTHER PECTINESTERASE 81 627 - -
Cma06g01533 629 ProSitePatterns Pectinesterase signature 1. 341 360 IPR018040 -
Cma06g01533 629 SUPERFAMILY Pectin lyase-like 313 625 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g01533 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101212686 802.742
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01533 Cma17g00341 CCT
Cma06g01533 Cma08g01239 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01517 Cma-Chr6:9589741 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01518 Cma-Chr6:9594721 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01519 Cma-Chr6:9601235 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01521 Cma-Chr6:9604438 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01528 Cma-Chr6:9624522 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01529 Cma-Chr6:9634771 Cma06g01533 Cma-Chr6:9645268 0 dispersed
Cma06g01533 Cma-Chr6:9645268 Cma08g00449 Cma-Chr8:2527124 0 dispersed
Cma06g01531 Cma-Chr6:9643423 Cma06g01533 Cma-Chr6:9645268 3.25E-24 proximal
Cma06g01533 Cma-Chr6:9645268 Cma06g01535 Cma-Chr6:9654615 7.11E-125 proximal
Cma06g01533 Cma-Chr6:9645268 Cma06g01536 Cma-Chr6:9656130 4.20E-47 proximal
Cma06g01533 Cma-Chr6:9645268 Cma06g01537 Cma-Chr6:9656441 5.16E-133 proximal
Cma06g01533 Cma-Chr6:9645268 Cma06g01538 Cma-Chr6:9657268 1.51E-58 proximal
Cma06g01533 Cma-Chr6:9645268 Cma06g01539 Cma-Chr6:9657647 1.04E-123 proximal
Cma06g01532 Cma-Chr6:9643820 Cma06g01533 Cma-Chr6:9645268 3.67E-126 tandem
Cma06g01533 Cma-Chr6:9645268 Cma06g01534 Cma-Chr6:9654218 6.08E-45 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g259 . . . . . . . . Cmo08g01213 Cmo17g00328 Cma06g01533 . . . Sed02g1163 . . Bhi01g01041 Tan10g1033 Cmetu06g0197 Lac11g0857 Hepe05g1419 . Lcy11g1391 Cla06g00463 Cam06g0495 Cec06g0498 Cco06g0497 Clacu06g0481 Cmu06g0482 Cre06g1255 Cone14ag0748 Cone15ag0754 . Cone4ag0137 Lsi05g01558 . Chy11g01528 Cme06g00752 . . . . Bpe05g00827 . . . . Cmo06g01513 . Cma08g01239 Cma17g00341 . . . . . . . . . . . Cla05g00670 Cam05g0734 Cec05g0742 Cco05g0741 Clacu05g0727 Cmu05g0692 Cre05g0766 Lsi09g01450 Csa03g01487 Chy06g00724 Cme11g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000192 6 4 7 5 3 4 2 4 4 4 4 4 18 4 4 18 4 8 1 4 4 5 16 7 9 3 8 10 5 3 182
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g01533 Cma_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cma06g01533 Cma_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.088158 0.0 0.0