Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g01535 | ATGAATGATCATCTTGGGAATCTTAAGATTTGGTTGAACGGTGCATTGACATATCAAGAAACTTGTTTGGATGGTTTCGAGAATGTTCTTGGCGATACTGGTGAAAAGATGAAGAGTTTGTTGAAGACGTCAAAAGAAATGACCGCCAATGGACTTGTGATGGTGGGTGAGGACTGCCACAAACGACAACTTCGAACAAAAGAATCCAATGAAGAAGAGGAAGAGCCATCTTGGGCCACTGGAGCTAACATCAAGGCGGATGTGGTGGTGGCTAAAGACGGAAGTGGCAAGTACAAGACAATAACTGAAACCCTTAAAGAGGTACCATTGAAGAGCAATACAACCTTTGTGATTTATGTGAAGGAAGGAGTTTATGAAGAGCAAGTGATGGTGGACAAAAAAATGACCTATGTCATGGTGATTGGAGACGGCCCGACTAAGACCAAGATCACAGGTAGCAAGAATGTCGTTGATGGGACAACCACATTCAAAAGTGCTACCTTTGCGGCGGTCGGATCCAACTTCATCGAAAAAGACTTGTGGTTCGATAACTCAACTGGGCCTGAGAAACACCAGGCTGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTAGAATGGACGACTATCAAGATACTCTCTACCCCCATGCTCACCGTCAATTCTACCGAGATTGCACAATCTCCGGTACCATTGATTGA | 711 | 44.16 | MNDHLGNLKIWLNGALTYQETCLDGFENVLGDTGEKMKSLLKTSKEMTANGLVMVGEDCHKRQLRTKESNEEEEEPSWATGANIKADVVVAKDGSGKYKTITETLKEVPLKSNTTFVIYVKEGVYEEQVMVDKKMTYVMVIGDGPTKTKITGSKNVVDGTTTFKSATFAAVGSNFIEKDLWFDNSTGPEKHQAVALRVQSDMSIFYNCRMDDYQDTLYPHAHRQFYRDCTISGTID | 236 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9654615 | 9655467 | - | CmaCh06G015350.1 | Cma06g01535 | 297089 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g01535 | 236 | Gene3D | - | 80 | 236 | IPR012334 | - | |
| Cma06g01535 | 236 | CDD | PMEI-like_3 | 1 | 55 | - | - | |
| Cma06g01535 | 236 | Pfam | Pectinesterase | 87 | 236 | IPR000070 | GO:0030599|GO:0042545 | |
| Cma06g01535 | 236 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 2 | 57 | IPR035513 | - | |
| Cma06g01535 | 236 | PANTHER | PECTINESTERASE | 4 | 236 | - | - | |
| Cma06g01535 | 236 | PANTHER | PECTINESTERASE | 4 | 236 | - | - | |
| Cma06g01535 | 236 | SUPERFAMILY | Pectin lyase-like | 84 | 236 | IPR011050 | - | |
| Cma06g01535 | 236 | Pfam | Plant invertase/pectin methylesterase inhibitor | 5 | 52 | IPR006501 | GO:0004857 | |
| Cma06g01535 | 236 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 5 | 56 | IPR035513 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g01532 | Cma-Chr6:9643820 | Cma06g01535 | Cma-Chr6:9654615 | 2.44E-179 | dispersed | |
| Cma06g01535 | Cma-Chr6:9654615 | Cma06g01522 | Cma-Chr6:9607091 | 1.13E-145 | dispersed | |
| Cma06g01533 | Cma-Chr6:9645268 | Cma06g01535 | Cma-Chr6:9654615 | 7.11E-125 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g01535 | K01051 | - | cmax:111472352 | 426.402 |